Gene family  

Sub-families
ORTHO000185 (85 genes in 24 species)
ORTHO001496 (38 genes in 22 species)
ORTHO001597 (37 genes in 17 species)
View all sub-families (17)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (13 genes)
bdi
Brachypodium distachyon (15 genes)
cpa
Carica papaya (11 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (15 genes)
gma
Glycine max (29 genes)
lja
Lotus japonicus (14 genes)
mdo
Malus domestica (33 genes)
mes
Manihot esculenta (20 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (17 genes)
ptr
Populus trichocarpa (30 genes)
rco
Ricinus communis (11 genes)
sbi
Sorghum bicolor (14 genes)
smo
Selaginella moellendorffii (8 genes)
tca
Theobroma cacao (14 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (11 genes)
zma
Zea mays (19 genes)



The gene family HOM000243 has 327 genes in 25 species (35 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 17, showing 20 records out of 327 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G14140 aly name=fgenesh2_kg.1__1458__AT1G13460.2;pid=471504;prot=eq;tid=471504 + scaffold_1 No
AL3G10090 aly name=fgenesh2_kg.3__1012__AT3G09880.1;pid=478311;prot=eq;tid=478311 + scaffold_3 No
AL3G23780 aly name=scaffold_302584.1;pid=898614;prot=eq;tid=930127 - scaffold_3 No
AL5G04580 aly name=scaffold_500486.1;pid=904782;prot=eq;tid=936295 + scaffold_5 No
AL5G04590 aly name=fgenesh2_kg.5__357__AT3G26030.1;pid=484365;prot=eq;tid=484365 + scaffold_5 No
AL5G25020 aly name=scaffold_502611.1;pid=906907;prot=eq;tid=938420 - scaffold_5 No
AL6G02620 aly name=fgenesh2_kg.6__258__AT5G03470.1;pid=487124;prot=eq;tid=487124 + scaffold_6 No
AL6G25730 aly name=fgenesh2_kg.6__2543__AT5G25510.1;pid=489409;prot=eq;tid=489409 - scaffold_6 No
AL6G36190 aly name=fgenesh1_pm.C_scaffold_6002608;pid=327388;prot=eq;tid=327388 + scaffold_6 No
AL7G01010 aly name=fgenesh2_kg.7__111__AT4G39100.1;pid=490678;prot=eq;tid=490678 - scaffold_7 No
AL7G20160 aly name=fgenesh1_pm.C_scaffold_7001632;pid=329405;prot=eq;tid=329405 + scaffold_7 No
AL7G28370 aly name=fgenesh1_pm.C_scaffold_7002200;pid=329973;prot=eq;tid=329973 - scaffold_7 No
AL7G37120 aly name=scaffold_703895.1;pid=916153;prot=eq;tid=947666 + scaffold_7 Yes
AT1G13460 ath Encodes protein phosphatase 2A (PP2A) B'theta subunit. Targeted to peroxisomes.;Protein phosphatase 2A regulatory B subunit family protein transcript=eq;prot=eq; + 1 No
AT3G09880 ath Encodes B' regulatory subunit of PP2A (AtB'beta).;Protein phosphatase 2A regulatory B subunit family protein transcript=eq;prot=eq; + 3 No
AT3G21650 ath Encodes protein phosphatase 2A (PP2A) B'zeta subunit. Targeted to mitochondria.;Protein phosphatase 2A regulatory B subunit family protein transcript=eq;prot=eq; - 3 No
AT3G26020 ath Encodes protein phosphatase 2A (PP2A) B'eta subunit. Targeted to nucleus and cytosol.;Protein phosphatase 2A regulatory B subunit family protein transcript=eq;prot=eq; + 3 No
AT3G26030 ath protein phosphatase 2A regulatory subunit isoform B' delta;serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta transcript=eq;prot=eq; + 3 No
AT3G54930 ath Protein phosphatase 2A regulatory B subunit family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT5G03470.1); Has 1209 Blast hits to 1201 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 572; Fungi - 149; Plants - 304; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).;Protein phosphatase 2A regulatory B subunit family protein transcript=eq;prot=eq; - 3 No
AT4G04260 ath Bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G22140.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Bromo-adjacent homology (BAH) domain-containing protein transcript=eq;prot=eq; + 4 No
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