Gene family  

Sub-families
ORTHO000761 (48 genes in 18 species)
ORTHO003388 (29 genes in 15 species)
ORTHO005294 (26 genes in 13 species)
View all sub-families (37)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (13 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (22 genes)
fve
Fragaria vesca (17 genes)
gma
Glycine max (34 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (32 genes)
mes
Manihot esculenta (21 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (32 genes)
osa
Oryza sativa ssp. japonica (20 genes)
osaindica
Oryza sativa ssp. indica (19 genes)
ptr
Populus trichocarpa (17 genes)
rco
Ricinus communis (19 genes)
sbi
Sorghum bicolor (10 genes)
tca
Theobroma cacao (24 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (8 genes)



The gene family HOM000241 has 330 genes in 19 species (49 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 17, showing 20 records out of 330 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G08850 aly name=fgenesh2_kg.3__880__AT3G08770.1;pid=478179;prot=eq;tid=478179 - scaffold_3 No
AL3G34720 aly name=fgenesh2_kg.3__3087__AT2G15050.1;pid=480386;prot=eq;tid=480386 + scaffold_3 No
AL3G34950 aly name=Al_scaffold_0003_3399;pid=874758;prot=eq;tid=906271 - scaffold_3 No
AL3G39430 aly name=fgenesh2_kg.3__3446__AT2G18370.1;pid=480745;prot=eq;tid=480745 + scaffold_3 No
AL4G24920 aly name=fgenesh2_kg.4__1923__AT2G38540.1;pid=482863;prot=eq;tid=482863 + scaffold_4 No
AL5G21240 aly name=fgenesh2_kg.5__1503__AT3G51590.1;pid=485511;prot=eq;tid=485511 - scaffold_5 No
AL5G21250 aly name=fgenesh2_kg.5__1504__AT3G51600.1;pid=485512;prot=eq;tid=485512 - scaffold_5 No
AL6G00170 aly name=Al_scaffold_0006_17;pid=860508;prot=eq;tid=892021 - scaffold_6 No
AL7G07890 aly name=Al_scaffold_0007_744;pid=857245;prot=eq;tid=888758 - scaffold_7 No
AL8G25470 aly name=scaffold_802561.1;pid=919161;prot=eq;tid=950674 - scaffold_8 No
AL8G25480 aly name=fgenesh2_kg.8__1875__AT5G59320.1;pid=496059;prot=eq;tid=496059 + scaffold_8 No
AL8G25490 aly name=Al_scaffold_0008_2426;pid=886162;prot=eq;tid=917675 + scaffold_8 No
AT2G15050 ath Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.;lipid transfer protein transcript=eq;prot=eq; + 2 No
AT2G15325 ath Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; - 2 No
AT2G18370 ath Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; + 2 No
AT2G38530 ath Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region. Expressed in flower, leaves and siliques but absent in roots. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.;lipid transfer protein 2 transcript=eq;prot=eq; + 2 No
AT2G38540 ath Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.;lipid transfer protein 1 transcript=eq;prot=eq; + 2 No
AT3G08770 ath Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.;lipid transfer protein 6 transcript=eq;prot=eq; - 3 No
AT3G51590 ath Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.;lipid transfer protein 12 transcript=eq;prot=eq; - 3 No
AT3G51600 ath Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.;lipid transfer protein 5 transcript=eq;prot=eq; - 3 No
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