Gene family  

Sub-families
ORTHO010486 (19 genes in 10 species)
ORTHO011700 (17 genes in 8 species)
ORTHO015050 (11 genes in 4 species)
View all sub-families (48)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (9 genes)
cpa
Carica papaya (13 genes)
fve
Fragaria vesca (46 genes)
gma
Glycine max (14 genes)
lja
Lotus japonicus (14 genes)
mdo
Malus domestica (75 genes)
mes
Manihot esculenta (25 genes)
mtr
Medicago truncatula (8 genes)
ptr
Populus trichocarpa (42 genes)
rco
Ricinus communis (41 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (30 genes)
vvi
Vitis vinifera (7 genes)



The gene family HOM000232 has 335 genes in 14 species (22 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 17, showing 20 records out of 335 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G28200 aly name=fgenesh2_kg.1__2859__AT1G24430.1;pid=472905;prot=eq;tid=472905 + scaffold_1 No
AL1G28210 aly name=fgenesh2_kg.1__2860__AT1G24420.1;pid=472906;prot=eq;tid=472906 - scaffold_1 No
AL5G04600 aly name=fgenesh2_kg.5__358__AT3G26040.1;pid=484366;prot=eq;tid=484366 + scaffold_5 No
AL5G09560 aly name=scaffold_500990.1;pid=905286;prot=eq;tid=936799 + scaffold_5 No
AL6G23790 aly name=fgenesh2_kg.6__2389__AT5G23970.1;pid=489255;prot=eq;tid=489255 + scaffold_6 No
AL7G28400 aly name=fgenesh2_kg.7__2785__AT4G15400.1;pid=493352;prot=eq;tid=493352 + scaffold_7 No
AL7G28430 aly name=scaffold_703016.1;pid=915274;prot=eq;tid=946787 + scaffold_7 No
AL7G29270 aly name=fgenesh1_pg.C_scaffold_7002488;pid=355315;prot=eq;tid=355315 + scaffold_7 No
AL8G10090 aly name=fgenesh2_kg.8__657__AT5G47950.1;pid=494841;prot=eq;tid=494841 + scaffold_8 No
AL8G10150 aly name=scaffold_801032.1;pid=917632;prot=eq;tid=949145 + scaffold_8 No
AT1G24420 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G15390.1); Has 2364 Blast hits to 2360 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 164; Plants - 2198; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; + 1 No
AT1G24430 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G26040.1); Has 2376 Blast hits to 2366 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 27; Plants - 2343; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; - 1 No
AT3G26040 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G30280.1); Has 2415 Blast hits to 2403 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 58; Plants - 2353; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; + 3 No
AT3G30280 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G15390.1); Has 2342 Blast hits to 2327 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 49; Plants - 2289; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; + 3 No
AT4G15390 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G30280.1); Has 2282 Blast hits to 2273 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 35; Plants - 2239; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; - 4 No
AT4G15400 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G47980.1); Has 2123 Blast hits to 2120 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 33; Plants - 2088; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; - 4 No
AT5G23970 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G47980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; + 5 No
AT5G47950 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G30280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; - 5 No
AT5G47980 ath HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT4G15400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;HXXXD-type acyl-transferase family protein transcript=eq;prot=eq; + 5 No
CP00016G01240 cpa name=evm.TU.supercontig_16.124;pid=evm.TU.supercontig_16.124;prot=eq;transcript=eq - supercontig_16 No
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