Gene family  

Sub-families
ORTHO000040 (179 genes in 19 species)
ORTHO008985 (21 genes in 15 species)
ORTHO017371 (8 genes in 1 species)
View all sub-families (28)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (18 genes)
bdi
Brachypodium distachyon (15 genes)
cpa
Carica papaya (13 genes)
fve
Fragaria vesca (12 genes)
gma
Glycine max (34 genes)
lja
Lotus japonicus (29 genes)
mdo
Malus domestica (35 genes)
mes
Manihot esculenta (13 genes)
mtr
Medicago truncatula (34 genes)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (17 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (29 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (15 genes)
vvi
Vitis vinifera (11 genes)
zma
Zea mays (19 genes)



The gene family HOM000230 has 338 genes in 20 species (24 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 17, showing 20 records out of 338 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G04770 aly name=Al_scaffold_0125_1;pid=856290;prot=eq;tid=887803 - scaffold_125 No
AL5G31790 aly name=fgenesh1_pm.C_scaffold_5002090;pid=324546;prot=eq;tid=324546 + scaffold_5 No
AL7G15090 aly name=fgenesh2_kg.7__1540__AT4G26920.1;pid=492107;prot=eq;tid=492107 - scaffold_7 No
AT1G05230 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.;homeodomain GLABROUS 2 transcript=eq;prot=eq; - 1 No
AT1G17920 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with HDG11, it is involved in trichome branching.;homeodomain GLABROUS 12 transcript=eq;prot=eq; - 1 No
AT1G34650 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.;homeodomain GLABROUS 10 transcript=eq;prot=eq; + 1 No
AT1G73360 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. It is involved in trichome branching.;homeodomain GLABROUS 11 transcript=eq;prot=eq; - 1 No
AT1G79840 ath Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.;HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain transcript=eq;prot=eq; + 1 No
AT2G32370 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.;homeodomain GLABROUS 3 transcript=eq;prot=eq; + 2 No
AT3G03260 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.;homeodomain GLABROUS 8 transcript=eq;prot=eq; - 3 No
AT3G61150 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.;homeodomain GLABROUS 1 transcript=eq;prot=eq; + 3 No
AT4G00730 ath Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development;Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein transcript=eq;prot=eq; - 4 No
AT4G04890 ath Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression.;protodermal factor 2 transcript=eq;prot=eq; - 4 No
AT4G17710 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.;homeodomain GLABROUS 4 transcript=eq;prot=eq; - 4 No
AT4G21750 ath Encodes a homeobox protein similar to GL2. It is expressed in both the apical and basal daughter cells of the zygote as well as their progeny. Expression is detected starting the two-celled stage of embryo development and is later restricted to the outermost, epidermal cell layer from its inception. Its promoter is highly modular with each region contributing to specific aspects of the gene's spatial and temporal expression. Double mutant analysis with PDF2, another L1-specific gene, suggests that their functions are partially redundant and the absence of both of the genes result in abnormal shoot development.;Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein transcript=eq;prot=eq; + 4 No
AT4G25530 ath Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.;FLOWERING WAGENINGEN transcript=eq;prot=eq; + 4 No
AT4G26920 ath START (StAR-related lipid-transfer) lipid-binding domain; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: START (StAR-related lipid-transfer) lipid-binding domain (TAIR:AT5G07260.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;START (StAR-related lipid-transfer) lipid-binding domain transcript=eq;prot=eq; + 4 No
AT5G07260 ath START (StAR-related lipid-transfer) lipid-binding domain; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: START (StAR-related lipid-transfer) lipid-binding domain (TAIR:AT4G26920.1); Has 440 Blast hits to 414 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 440; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;START (StAR-related lipid-transfer) lipid-binding domain transcript=eq;prot=eq; + 5 No
AT5G17320 ath Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.;homeodomain GLABROUS 9 transcript=eq;prot=eq; - 5 No
AT5G46880 ath homeobox-7 (HB-7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 4 (TAIR:AT4G17710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;homeobox-7 transcript=eq;prot=eq; + 5 No
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