Gene family  

Sub-families
ORTHO000280 (72 genes in 20 species)
ORTHO000369 (64 genes in 24 species)
ORTHO000821 (46 genes in 22 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (14 genes)
ath
Arabidopsis thaliana (13 genes)
bdi
Brachypodium distachyon (14 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (32 genes)
lja
Lotus japonicus (23 genes)
mdo
Malus domestica (28 genes)
mes
Manihot esculenta (15 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (13 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (24 genes)
osaindica
Oryza sativa ssp. indica (20 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (15 genes)
ptr
Populus trichocarpa (18 genes)
rco
Ricinus communis (10 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (12 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (19 genes)
zma
Zea mays (20 genes)



The gene family HOM000229 has 338 genes in 25 species (21 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 17, showing 20 records out of 338 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G06780 aly name=scaffold_100724.1;pid=887930;prot=eq;tid=919443 + scaffold_1 No
AL1G13240 aly name=Al_scaffold_0001_1302;pid=879535;prot=eq;tid=911048 - scaffold_1 No
AL1G13450 aly name=scaffold_101427.1;pid=888633;prot=eq;tid=920146 - scaffold_1 No
AL3G41730 aly name=fgenesh2_kg.3__3618__AT2G20800.1;pid=480917;prot=eq;tid=480917 - scaffold_3 No
AL4G14520 aly name=fgenesh2_kg.4__968__AT2G29990.1;pid=481908;prot=eq;tid=481908 - scaffold_4 No
AL4G26560 aly name=fgenesh2_kg.4__2091__AT2G39940.1;pid=483031;prot=eq;tid=483031 - scaffold_4 No
AL5G05520 aly name=fgenesh2_kg.5__448__AT3G26810.1;pid=484456;prot=eq;tid=484456 + scaffold_5 No
AL5G34070 aly name=scaffold_503580.1;pid=907876;prot=eq;tid=939389 - scaffold_5 No
AL6G36970 aly name=scaffold_603827.1;pid=911770;prot=eq;tid=943283 + scaffold_6 No
AL6G38090 aly name=fgenesh2_kg.6__3378__AT4G03190.1;pid=490244;prot=eq;tid=490244 + scaffold_6 No
AL7G13620 aly name=scaffold_701442.1;pid=913700;prot=eq;tid=945213 - scaffold_7 No
AL7G17730 aly name=fgenesh2_kg.7__1841__AT4G24390.1;pid=492408;prot=eq;tid=492408 + scaffold_7 No
AL7G21180 aly name=fgenesh2_kg.7__2167__AT4G21490.1;pid=492734;prot=eq;tid=492734 + scaffold_7 No
AL8G13860 aly name=fgenesh2_kg.8__870__AT5G49980.1;pid=495054;prot=eq;tid=495054 - scaffold_8 No
AT1G07180 ath Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.;alternative NAD(P)H dehydrogenase 1 transcript=eq;prot=eq; + 1 No
AT1G12820 ath Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots.;auxin signaling F-box 3 transcript=eq;prot=eq; - 1 No
AT2G20800 ath NAD(P)H dehydrogenase B4 (NDB4); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: extrinsic to mitochondrial inner membrane, mitochondrion, plastid; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B3 (TAIR:AT4G21490.1); Has 11460 Blast hits to 10815 proteins in 2238 species: Archae - 334; Bacteria - 8988; Metazoa - 48; Fungi - 603; Plants - 426; Viruses - 0; Other Eukaryotes - 1061 (source: NCBI BLink).;NAD(P)H dehydrogenase B4 transcript=eq;prot=eq; - 2 No
AT2G29990 ath alternative NAD(P)H dehydrogenase 2 (NDA2); FUNCTIONS IN: NADH dehydrogenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 1 (TAIR:AT1G07180.1); Has 11797 Blast hits to 11597 proteins in 2273 species: Archae - 301; Bacteria - 9312; Metazoa - 49; Fungi - 695; Plants - 411; Viruses - 0; Other Eukaryotes - 1029 (source: NCBI BLink).;alternative NAD(P)H dehydrogenase 2 transcript=eq;prot=eq; - 2 No
AT2G39940 ath Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.;RNI-like superfamily protein transcript=eq;prot=eq; - 2 No
AT3G26810 ath auxin signaling F-box 2 (AFB2); FUNCTIONS IN: ubiquitin-protein ligase activity, auxin binding; INVOLVED IN: stamen development, pollen maturation, response to molecule of bacterial origin; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: auxin signaling F-box 3 (TAIR:AT1G12820.1); Has 2856 Blast hits to 1854 proteins in 175 species: Archae - 0; Bacteria - 10; Metazoa - 953; Fungi - 156; Plants - 1568; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).;auxin signaling F-box 2 transcript=eq;prot=eq; + 3 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier