Gene family  

Sub-families
ORTHO000520 (55 genes in 22 species)
ORTHO000632 (51 genes in 16 species)
ORTHO001435 (38 genes in 19 species)
View all sub-families (16)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (13 genes)
ath
Arabidopsis thaliana (17 genes)
bdi
Brachypodium distachyon (12 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (14 genes)
gma
Glycine max (26 genes)
lja
Lotus japonicus (15 genes)
mdo
Malus domestica (27 genes)
mes
Manihot esculenta (12 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (14 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (13 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ota
Ostreococcus tauri (6 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (29 genes)
rco
Ricinus communis (24 genes)
sbi
Sorghum bicolor (15 genes)
smo
Selaginella moellendorffii (26 genes)
tca
Theobroma cacao (14 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (11 genes)
zma
Zea mays (14 genes)



The gene family HOM000226 has 344 genes in 25 species (12 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 18, showing 20 records out of 344 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G21680 aly name=fgenesh2_kg.1__2240__AT1G20560.1;pid=472286;prot=eq;tid=472286 - scaffold_1 No
AL1G22770 aly name=scaffold_102410.1;pid=889616;prot=eq;tid=921129 - scaffold_1 No
AL1G31680 aly name=fgenesh1_pm.C_scaffold_1002472;pid=313692;prot=eq;tid=313692 + scaffold_1 No
AL2G12600 aly name=Al_scaffold_0002_1135;pid=876541;prot=eq;tid=908054 - scaffold_2 No
AL2G13010 aly name=fgenesh2_kg.2__844__AT1G66120.1;pid=475714;prot=eq;tid=475714 + scaffold_2 No
AL2G24850 aly name=fgenesh1_pg.C_scaffold_2001868;pid=339769;prot=eq;tid=339769 + scaffold_2 No
AL2G25200 aly name=Al_scaffold_0002_2330;pid=877736;prot=eq;tid=909249 - scaffold_2 No
AL2G26190 aly name=fgenesh2_kg.2__2018__AT1G77240.1;pid=476888;prot=eq;tid=476888 - scaffold_2 No
AL3G17170 aly name=fgenesh1_pm.C_scaffold_3001408;pid=318392;prot=eq;tid=318392 + scaffold_3 No
AL3G18170 aly name=fgenesh2_kg.3__1859__AT3G16910.1;pid=479158;prot=eq;tid=479158 - scaffold_3 No
AL3G38430 aly name=fgenesh2_kg.3__3358__AT2G17650.1;pid=480657;prot=eq;tid=480657 + scaffold_3 No
AL5G17930 aly name=scaffold_501858.1;pid=906154;prot=eq;tid=937667 - scaffold_5 No
AL6G16240 aly name=fgenesh2_kg.6__1623__AT5G16370.1;pid=488489;prot=eq;tid=488489 - scaffold_6 No
AT1G20560 ath acyl activating enzyme 1 (AAE1); FUNCTIONS IN: AMP binding; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT2G17650.1); Has 77741 Blast hits to 70781 proteins in 3571 species: Archae - 1189; Bacteria - 50806; Metazoa - 3349; Fungi - 3424; Plants - 2387; Viruses - 1; Other Eukaryotes - 16585 (source: NCBI BLink).;acyl activating enzyme 1 transcript=eq;prot=eq; - 1 No
AT1G21530 ath AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21540.1); Has 77153 Blast hits to 70454 proteins in 3601 species: Archae - 1159; Bacteria - 50507; Metazoa - 3344; Fungi - 3637; Plants - 2272; Viruses - 1; Other Eukaryotes - 16233 (source: NCBI BLink).;AMP-dependent synthetase and ligase family protein transcript=eq;prot=eq; - 1 No
AT1G21540 ath AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G21530.2); Has 76629 Blast hits to 70171 proteins in 3593 species: Archae - 1132; Bacteria - 50179; Metazoa - 3309; Fungi - 3660; Plants - 2281; Viruses - 1; Other Eukaryotes - 16067 (source: NCBI BLink).;AMP-dependent synthetase and ligase family protein transcript=eq;prot=eq; - 1 No
AT1G30520 ath Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.;acyl-activating enzyme 14 transcript=eq;prot=eq; + 1 No
AT1G65880 ath Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.;benzoyloxyglucosinolate 1 transcript=eq;prot=eq; - 1 No
AT1G65890 ath acyl activating enzyme 12 (AAE12); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: leaf apex, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: benzoyloxyglucosinolate 1 (TAIR:AT1G65880.1); Has 77298 Blast hits to 71199 proteins in 3613 species: Archae - 1120; Bacteria - 50555; Metazoa - 3258; Fungi - 3581; Plants - 2188; Viruses - 1; Other Eukaryotes - 16595 (source: NCBI BLink).;acyl activating enzyme 12 transcript=eq;prot=eq; - 1 No
AT1G66120 ath AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: embryo, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 12 (TAIR:AT1G65890.1); Has 78414 Blast hits to 71735 proteins in 3650 species: Archae - 1135; Bacteria - 51527; Metazoa - 3303; Fungi - 3365; Plants - 2332; Viruses - 1; Other Eukaryotes - 16751 (source: NCBI BLink).;AMP-dependent synthetase and ligase family protein transcript=eq;prot=eq; + 1 No
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