Gene family  

Sub-families
ORTHO000033 (195 genes in 20 species)
ORTHO001537 (37 genes in 24 species)
ORTHO011243 (17 genes in 13 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (16 genes)
ath
Arabidopsis thaliana (13 genes)
bdi
Brachypodium distachyon (16 genes)
cpa
Carica papaya (11 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (20 genes)
gma
Glycine max (26 genes)
lja
Lotus japonicus (20 genes)
mdo
Malus domestica (26 genes)
mes
Manihot esculenta (16 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (19 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (17 genes)
osaindica
Oryza sativa ssp. indica (20 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (12 genes)
ptr
Populus trichocarpa (24 genes)
rco
Ricinus communis (13 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (14 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (19 genes)
zma
Zea mays (18 genes)



The gene family HOM000220 has 347 genes in 25 species (49 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 18, showing 20 records out of 347 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G47540 aly name=Al_scaffold_0001_4681;pid=882914;prot=eq;tid=914427 - scaffold_1 No
AL1G49740 aly name=Al_scaffold_0001_4899;pid=883132;prot=eq;tid=914645 - scaffold_1 No
AL2G02480 aly name=scaffold_200260.1;pid=893186;prot=eq;tid=924699 + scaffold_2 No
AL2G04910 aly name=fgenesh2_kg.2__355__AT1G61010.3;pid=475225;prot=eq;tid=475225 + scaffold_2 No
AL3G11300 aly name=scaffold_301257.1;pid=897287;prot=eq;tid=928800 + scaffold_3 No
AL3G16740 aly name=fgenesh2_kg.3__1730__AT3G15730.1;pid=479029;prot=eq;tid=479029 + scaffold_3 No
AL4G17760 aly name=scaffold_401826.1;pid=902325;prot=eq;tid=933838 - scaffold_4 No
AL4G29210 aly name=scaffold_403049.1;pid=903548;prot=eq;tid=935061 - scaffold_4 No
AL5G00760 aly name=fgenesh1_pm.C_scaffold_5000060;pid=322516;prot=eq;tid=322516 + scaffold_5 Yes
AL6G17330 aly name=scaffold_601798.1;pid=909741;prot=eq;tid=941254 - scaffold_6 Yes
AL6G25510 aly name=Al_scaffold_0006_2441;pid=862932;prot=eq;tid=894445 - scaffold_6 No
AL6G26340 aly name=scaffold_602737.1;pid=910680;prot=eq;tid=942193 + scaffold_6 No
AL6G34930 aly name=fgenesh2_kg.6__3133__AT4G11840.1;pid=489999;prot=eq;tid=489999 - scaffold_6 No
AL6G34940 aly name=fgenesh1_pg.C_scaffold_6002860;pid=352267;prot=eq;tid=352267 - scaffold_6 No
AL6G41420 aly name=fgenesh2_kg.6__3676__AT4G00240.1;pid=490542;prot=eq;tid=490542 + scaffold_6 No
AL7G05000 aly name=fgenesh2_kg.7__496__AT4G35790.1;pid=491063;prot=eq;tid=491063 + scaffold_7 No
AT1G52570 ath member of C2-PLD subfamily;phospholipase D alpha 2 transcript=eq;prot=eq; - 1 No
AT1G55180 ath member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class. Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties.;phospholipase D alpha 4 transcript=eq;prot=eq; - 1 No
AT1G61010 ath cleavage and polyadenylation specificity factor 73-I (CPSF73-I); CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term (InterPro:IPR021718); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 5076 Blast hits to 5016 proteins in 1410 species: Archae - 467; Bacteria - 2637; Metazoa - 590; Fungi - 276; Plants - 187; Viruses - 2; Other Eukaryotes - 917 (source: NCBI BLink).;cleavage and polyadenylation specificity factor 73-I transcript=eq;prot=eq; - 1 No
AT2G01730 ath a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo;cleavage and polyadenylation specificity factor 73 kDa subunit-II transcript=eq;prot=eq; + 2 Yes
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