Gene family  

Sub-families
ORTHO000153 (91 genes in 19 species)
ORTHO001456 (38 genes in 24 species)
ORTHO003129 (30 genes in 21 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (12 genes)
bdi
Brachypodium distachyon (16 genes)
cpa
Carica papaya (12 genes)
cre
Chlamydomonas reinhardtii (9 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (27 genes)
lja
Lotus japonicus (25 genes)
mdo
Malus domestica (36 genes)
mes
Manihot esculenta (17 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (21 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (18 genes)
osaindica
Oryza sativa ssp. indica (18 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (15 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (11 genes)
sbi
Sorghum bicolor (18 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (11 genes)
vca
Volvox carteri (8 genes)
vvi
Vitis vinifera (11 genes)
zma
Zea mays (19 genes)



The gene family HOM000219 has 352 genes in 25 species (37 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 18, showing 20 records out of 352 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09880 aly name=fgenesh2_kg.1__1071__AT1G10040.2;pid=471117;prot=eq;tid=471117 - scaffold_1 No
AL1G30020 aly name=fgenesh2_kg.1__3072__AT1G29120.2;pid=473118;prot=eq;tid=473118 + scaffold_1 No
AL4G01940 aly name=fgenesh2_kg.4__169__AT2G22480.1;pid=481109;prot=eq;tid=481109 + scaffold_4 No
AL5G32930 aly name=scaffold_503463.1;pid=907759;prot=eq;tid=939272 + scaffold_5 No
AL6G07320 aly name=fgenesh1_pg.C_scaffold_6000616;pid=350023;prot=eq;tid=350023 - scaffold_6 Yes
AL7G08510 aly name=fgenesh2_kg.7__854__AT4G32840.1;pid=491421;prot=eq;tid=491421 + scaffold_7 No
AL7G12540 aly name=scaffold_701332.1;pid=913590;prot=eq;tid=945103 + scaffold_7 No
AL7G15770 aly name=fgenesh2_kg.7__1619__AT4G26270.1;pid=492186;prot=eq;tid=492186 + scaffold_7 No
AL7G16350 aly name=fgenesh2_kg.7__1676__AT4G25770.1;pid=492243;prot=eq;tid=492243 + scaffold_7 No
AL8G15400 aly name=fgenesh2_kg.8__1003__AT5G51180.1;pid=495187;prot=eq;tid=495187 + scaffold_8 No
AL8G22250 aly name=fgenesh2_kg.8__1570__AT5G56630.1;pid=495754;prot=eq;tid=495754 + scaffold_8 No
AL8G27820 aly name=fgenesh2_kg.8__2140__AT5G61580.1;pid=496324;prot=eq;tid=496324 + scaffold_8 No
AT1G10040 ath alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1); Has 823 Blast hits to 815 proteins in 221 species: Archae - 0; Bacteria - 56; Metazoa - 168; Fungi - 260; Plants - 184; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 1 No
AT1G29120 ath Hydrolase-like protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G25770.1).;Hydrolase-like protein family transcript=eq;prot=eq; + 1 No
AT2G22480 ath phosphofructokinase 5 (PFK5); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 4 (TAIR:AT5G61580.1); Has 7923 Blast hits to 7389 proteins in 2127 species: Archae - 28; Bacteria - 5127; Metazoa - 660; Fungi - 395; Plants - 392; Viruses - 2; Other Eukaryotes - 1319 (source: NCBI BLink).;phosphofructokinase 5 transcript=eq;prot=eq; + 2 No
AT4G25770 ath alpha/beta-Hydrolases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF676, hydrolase-like (InterPro:IPR007751); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G10040.1); Has 758 Blast hits to 753 proteins in 174 species: Archae - 0; Bacteria - 2; Metazoa - 151; Fungi - 296; Plants - 173; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 4 No
AT4G26270 ath phosphofructokinase 3 (PFK3); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 7 (TAIR:AT5G56630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;phosphofructokinase 3 transcript=eq;prot=eq; - 4 No
AT4G29220 ath phosphofructokinase 1 (PFK1); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, 6-phosphofructokinase complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 3 (TAIR:AT4G26270.1); Has 7864 Blast hits to 7397 proteins in 2157 species: Archae - 28; Bacteria - 5161; Metazoa - 680; Fungi - 324; Plants - 394; Viruses - 2; Other Eukaryotes - 1275 (source: NCBI BLink).;phosphofructokinase 1 transcript=eq;prot=eq; - 4 No
AT4G32840 ath phosphofructokinase 6 (PFK6); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 1 (TAIR:AT4G29220.1); Has 8046 Blast hits to 7506 proteins in 2189 species: Archae - 28; Bacteria - 5254; Metazoa - 679; Fungi - 399; Plants - 394; Viruses - 4; Other Eukaryotes - 1288 (source: NCBI BLink).;phosphofructokinase 6 transcript=eq;prot=eq; - 4 No
AT5G07590 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 672 Blast hits to 646 proteins in 166 species: Archae - 0; Bacteria - 97; Metazoa - 271; Fungi - 156; Plants - 85; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 5 Yes
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