Gene family  

Sub-families
ORTHO001974 (34 genes in 20 species)
ORTHO002665 (31 genes in 22 species)
ORTHO002968 (30 genes in 20 species)
View all sub-families (26)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (12 genes)
bdi
Brachypodium distachyon (14 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (8 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (24 genes)
lja
Lotus japonicus (31 genes)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (20 genes)
mrcc299
Micromonas sp. RCC299 (8 genes)
mtr
Medicago truncatula (29 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (26 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (8 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (20 genes)
sbi
Sorghum bicolor (21 genes)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (17 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (13 genes)
zma
Zea mays (13 genes)



The gene family HOM000215 has 356 genes in 25 species (17 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 18, showing 20 records out of 356 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G10030 aly name=scaffold_201018.1;pid=893944;prot=eq;tid=925457 - scaffold_2 No
AL2G10290 aly name=fgenesh2_kg.2__709__ATCG00160.1;pid=475579;prot=eq;tid=475579 + scaffold_2 No
AL2G10300 aly name=scaffold_201049.1;pid=893975;prot=eq;tid=925488 + scaffold_2 No
AL2G10310 aly name=scaffold_201050.1;pid=893976;prot=eq;tid=925489 + scaffold_2 No
AL2G10330 aly name=fgenesh2_kg.2__714__ATCG00120.1;pid=475584;prot=eq;tid=475584 + scaffold_2 No
AL2G10840 aly name=scaffold_201112.1;pid=894038;prot=eq;tid=925551 + scaffold_2 No
AL3G36780 aly name=Al_scaffold_0003_3567;pid=874926;prot=eq;tid=906439 + scaffold_3 No
AL5G12540 aly name=scaffold_501292.1;pid=905588;prot=eq;tid=937101 - scaffold_5 No
AL6G10870 aly name=fgenesh2_kg.6__1075__AT5G11090.1;pid=487941;prot=eq;tid=487941 + scaffold_6 No
AL6G20670 aly name=scaffold_602134.1;pid=910077;prot=eq;tid=941590 - scaffold_6 No
AL6G25400 aly name=fgenesh2_kg.6__2513__AT5G25280.2;pid=489379;prot=eq;tid=489379 + scaffold_6 No
AL6G29880 aly name=scaffold_603095.1;pid=911038;prot=eq;tid=942551 - scaffold_6 Yes
AT2G07698 ath ATPase, F1 complex, alpha subunit protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) RNA binding, zinc ion binding; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: in 7 components; EXPRESSED IN: male gametophyte, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, alpha subunit (InterPro:IPR005294), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase subunit 1 (TAIR:ATMG01190.1); Has 42544 Blast hits to 42509 proteins in 10112 species: Archae - 769; Bacteria - 22602; Metazoa - 1520; Fungi - 703; Plants - 8267; Viruses - 0; Other Eukaryotes - 8683 (source: NCBI BLink).;ATPase, F1 complex, alpha subunit protein transcript=eq;prot=eq; + 2 No
AT5G11090 ath serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G25280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;serine-rich protein-related transcript=eq;prot=eq; + 5 No
AT5G20370 ath serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G11090.1); Has 168 Blast hits to 168 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;serine-rich protein-related transcript=eq;prot=eq; - 5 No
AT5G25280 ath serine-rich protein-related; BEST Arabidopsis thaliana protein match is: serine-rich protein-related (TAIR:AT5G11090.1); Has 1306 Blast hits to 350 proteins in 64 species: Archae - 0; Bacteria - 8; Metazoa - 365; Fungi - 73; Plants - 167; Viruses - 0; Other Eukaryotes - 693 (source: NCBI BLink).;serine-rich protein-related transcript=eq;prot=eq; + 5 No
ATCG00120 ath Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast.;ATP synthase subunit alpha transcript=eq;prot=eq; - chloroplast No
ATCG00140 ath ATPase III subunit;ATP synthase subunit C family protein transcript=eq;prot=eq; - chloroplast No
ATCG00150 ath Encodes a subunit of ATPase complex CF0, which is a proton channel that supplies the proton motive force to drive ATP synthesis by CF1 portion of the complex.;ATPase, F0 complex, subunit A protein transcript=eq;prot=eq; - chloroplast No
ATCG00160 ath Chloroplast ribosomal protein S2;ribosomal protein S2 transcript=eq;prot=eq; - chloroplast No
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