Gene family  

Sub-families
ORTHO000026 (199 genes in 25 species)
ORTHO040972 (3 genes in 1 species)
ORTHO057140 (2 genes in 1 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (16 genes)
ath
Arabidopsis thaliana (15 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (16 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (14 genes)
gma
Glycine max (13 genes)
lja
Lotus japonicus (14 genes)
mdo
Malus domestica (46 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (12 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (13 genes)
osaindica
Oryza sativa ssp. indica (23 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (19 genes)
rco
Ricinus communis (13 genes)
sbi
Sorghum bicolor (30 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (14 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (57 genes)
zma
Zea mays (15 genes)



The gene family HOM000213 has 356 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 18, showing 20 records out of 356 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G11760 aly name=Al_scaffold_1033_1;pid=855790;prot=eq;tid=887303 + scaffold_1033 No
AL0G11770 aly name=scaffold_103300002.1;pid=920154;prot=eq;tid=951667 + scaffold_1033 No
AL1G17480 aly name=fgenesh1_pg.C_scaffold_1001499;pid=334934;prot=eq;tid=334934 + scaffold_1 No
AL2G14160 aly name=Al_scaffold_0002_1274;pid=876680;prot=eq;tid=908193 + scaffold_2 No
AL2G14650 aly name=fgenesh2_kg.2__921__AT1G66960.1;pid=475791;prot=eq;tid=475791 - scaffold_2 No
AL2G15400 aly name=scaffold_201562.1;pid=894488;prot=eq;tid=926001 + scaffold_2 No
AL2G27480 aly name=fgenesh1_pm.C_scaffold_2001782;pid=316749;prot=eq;tid=316749 + scaffold_2 No
AL2G27510 aly name=fgenesh2_kg.2__2143__AT1G78500.1;pid=477013;prot=eq;tid=477013 + scaffold_2 No
AL2G27990 aly name=fgenesh1_pm.C_scaffold_2001826;pid=316793;prot=eq;tid=316793 - scaffold_2 No
AL2G28000 aly name=scaffold_202874.1;pid=895800;prot=eq;tid=927313 + scaffold_2 No
AL2G28010 aly name=fgenesh2_kg.2__2195__AT1G78970.2;pid=477065;prot=eq;tid=477065 + scaffold_2 No
AL3G31980 aly name=fgenesh2_kg.3__2932__AT2G07050.1;pid=480231;prot=eq;tid=480231 + scaffold_3 No
AL5G08810 aly name=Al_scaffold_0005_844;pid=865365;prot=eq;tid=896878 + scaffold_5 No
AL5G13150 aly name=scaffold_501362.1;pid=905658;prot=eq;tid=937171 - scaffold_5 No
AL7G28460 aly name=fgenesh2_kg.7__2790__AT4G15370.1;pid=493357;prot=eq;tid=493357 + scaffold_7 No
AL8G10190 aly name=Al_scaffold_0008_969;pid=884705;prot=eq;tid=916218 + scaffold_8 No
AT1G66960 ath Terpenoid cyclases family protein; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: lupeol synthase 2 (TAIR:AT1G78960.1); Has 2121 Blast hits to 1981 proteins in 568 species: Archae - 2; Bacteria - 916; Metazoa - 134; Fungi - 247; Plants - 610; Viruses - 0; Other Eukaryotes - 212 (source: NCBI BLink).;Terpenoid cyclases family protein transcript=eq;prot=eq; - 1 No
AT1G78480 ath Prenyltransferase family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: lupeol synthase 2 (TAIR:AT1G78960.1); Has 675 Blast hits to 672 proteins in 191 species: Archae - 0; Bacteria - 5; Metazoa - 65; Fungi - 169; Plants - 397; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).;Prenyltransferase family protein transcript=eq;prot=eq; - 1 No
AT1G78500 ath Encodes a protein with pentacyclic triterpene synthase activity. In addition to the compounds lupeol, α-amyrin and bauerenol, this enzyme was also shown to produce two seco-triterpenes: α- and β-seco-amyrin.;Terpenoid cyclases family protein transcript=eq;prot=eq; + 1 No
AT1G78950 ath Terpenoid cyclases family protein; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Squalene cyclase (InterPro:IPR018333), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: camelliol C synthase 1 (TAIR:AT1G78955.1); Has 2107 Blast hits to 2005 proteins in 574 species: Archae - 6; Bacteria - 886; Metazoa - 160; Fungi - 240; Plants - 609; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).;Terpenoid cyclases family protein transcript=eq;prot=eq; - 1 No
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