Gene family  

Sub-families
ORTHO000228 (78 genes in 20 species)
ORTHO002921 (30 genes in 18 species)
ORTHO005387 (26 genes in 17 species)
View all sub-families (24)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (13 genes)
bdi
Brachypodium distachyon (16 genes)
cpa
Carica papaya (14 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (28 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (46 genes)
mes
Manihot esculenta (21 genes)
mtr
Medicago truncatula (15 genes)
osa
Oryza sativa ssp. japonica (14 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (11 genes)
ptr
Populus trichocarpa (28 genes)
rco
Ricinus communis (15 genes)
sbi
Sorghum bicolor (24 genes)
smo
Selaginella moellendorffii (13 genes)
tca
Theobroma cacao (14 genes)
vvi
Vitis vinifera (14 genes)
zma
Zea mays (16 genes)



The gene family HOM000212 has 358 genes in 22 species (18 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 18, showing 20 records out of 358 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G21620 aly name=fgenesh1_pm.C_scaffold_1001745;pid=312965;prot=eq;tid=312965 - scaffold_1 No
AL1G21630 aly name=fgenesh2_kg.1__2232__AT1G20510.1;pid=472278;prot=eq;tid=472278 - scaffold_1 No
AL1G46430 aly name=scaffold_104938.1;pid=892144;prot=eq;tid=923657 - scaffold_1 No
AL2G02490 aly name=scaffold_200261.1;pid=893187;prot=eq;tid=924700 - scaffold_2 No
AL2G09070 aly name=fgenesh1_pm.C_scaffold_2000502;pid=315469;prot=eq;tid=315469 - scaffold_2 No
AL3G23310 aly name=fgenesh2_kg.3__2344__AT3G21230.1;pid=479643;prot=eq;tid=479643 - scaffold_3 No
AL3G23320 aly name=Al_scaffold_0003_2273;pid=873632;prot=eq;tid=905145 - scaffold_3 No
AL6G37120 aly name=fgenesh2_kg.6__3300__AT4G05160.1;pid=490166;prot=eq;tid=490166 + scaffold_6 No
AL7G23590 aly name=fgenesh2_kg.7__2388__AT4G19010.1;pid=492955;prot=eq;tid=492955 + scaffold_7 No
AL7G40670 aly name=fgenesh2_kg.7__3598__AT5G38120.1;pid=494165;prot=eq;tid=494165 - scaffold_7 No
AL8G29940 aly name=scaffold_803027.1;pid=919627;prot=eq;tid=951140 - scaffold_8 No
AT1G20480 ath AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 83252 Blast hits to 75672 proteins in 3756 species: Archae - 1173; Bacteria - 54045; Metazoa - 3530; Fungi - 4633; Plants - 2807; Viruses - 1; Other Eukaryotes - 17063 (source: NCBI BLink).;AMP-dependent synthetase and ligase family protein transcript=eq;prot=eq; - 1 No
AT1G20490 ath AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 66005 Blast hits to 61269 proteins in 3543 species: Archae - 1113; Bacteria - 45325; Metazoa - 2980; Fungi - 3725; Plants - 2277; Viruses - 1; Other Eukaryotes - 10584 (source: NCBI BLink).;AMP-dependent synthetase and ligase family protein transcript=eq;prot=eq; - 1 No
AT1G20500 ath AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT5G38120.1); Has 82776 Blast hits to 75503 proteins in 3739 species: Archae - 1179; Bacteria - 53477; Metazoa - 3434; Fungi - 4583; Plants - 2754; Viruses - 1; Other Eukaryotes - 17348 (source: NCBI BLink).;AMP-dependent synthetase and ligase family protein transcript=eq;prot=eq; - 1 No
AT1G20510 ath OPC-8:0 CoA ligase1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 85702 Blast hits to 78184 proteins in 3819 species: Archae - 1213; Bacteria - 55131; Metazoa - 3605; Fungi - 4761; Plants - 2762; Viruses - 1; Other Eukaryotes - 18229 (source: NCBI BLink).;OPC-8:0 CoA ligase1 transcript=eq;prot=eq; - 1 No
AT1G51680 ath encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.;4-coumarate:CoA ligase 1 transcript=eq;prot=eq; - 1 No
AT1G62940 ath encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.;acyl-CoA synthetase 5 transcript=eq;prot=eq; + 1 No
AT1G65060 ath encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.;4-coumarate:CoA ligase 3 transcript=eq;prot=eq; - 1 No
AT3G21230 ath The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.;4-coumarate:CoA ligase 5 transcript=eq;prot=eq; - 3 No
AT3G21240 ath encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate.;4-coumarate:CoA ligase 2 transcript=eq;prot=eq; - 3 No
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