Gene family  

Sub-families
ORTHO001579 (37 genes in 17 species)
ORTHO001969 (34 genes in 18 species)
ORTHO006917 (23 genes in 10 species)
View all sub-families (50)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (15 genes)
ath
Arabidopsis thaliana (23 genes)
bdi
Brachypodium distachyon (22 genes)
cpa
Carica papaya (8 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (36 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (18 genes)
mes
Manihot esculenta (18 genes)
mtr
Medicago truncatula (21 genes)
osa
Oryza sativa ssp. japonica (32 genes)
osaindica
Oryza sativa ssp. indica (34 genes)
ptr
Populus trichocarpa (15 genes)
rco
Ricinus communis (14 genes)
sbi
Sorghum bicolor (24 genes)
tca
Theobroma cacao (22 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (29 genes)



The gene family HOM000205 has 363 genes in 18 species (15 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 19, showing 20 records out of 363 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G12460 aly name=fgenesh2_kg.1__1313__AT1G12090.1;pid=471359;prot=eq;tid=471359 - scaffold_1 No
AL2G02980 aly name=fgenesh2_kg.2__226__AT1G62500.1;pid=475096;prot=eq;tid=475096 - scaffold_2 No
AL3G24380 aly name=Al_scaffold_0003_2365;pid=873724;prot=eq;tid=905237 - scaffold_3 No
AL3G32570 aly name=fgenesh2_kg.3__2977__AT2G10940.2;pid=480276;prot=eq;tid=480276 - scaffold_3 No
AL4G33060 aly name=fgenesh2_kg.4__2714__AT2G45180.1;pid=483654;prot=eq;tid=483654 + scaffold_4 No
AL6G35730 aly name=fgenesh2_kg.6__3187__AT4G12480.1;pid=490053;prot=eq;tid=490053 - scaffold_6 No
AL6G35740 aly name=scaffold_603705.1;pid=911648;prot=eq;tid=943161 - scaffold_6 No
AL6G35760 aly name=scaffold_603707.1;pid=911650;prot=eq;tid=943163 - scaffold_6 No
AL6G35770 aly name=scaffold_603708.1;pid=911651;prot=eq;tid=943164 - scaffold_6 No
AL6G35780 aly name=scaffold_603709.1;pid=911652;prot=eq;tid=943165 - scaffold_6 No
AL6G35790 aly name=fgenesh2_kg.6__3188__AT4G12530.1;pid=490054;prot=eq;tid=490054 - scaffold_6 No
AL7G19780 aly name=fgenesh2_kg.7__2055__AT4G22490.1;pid=492622;prot=eq;tid=492622 + scaffold_7 No
AL7G19810 aly name=scaffold_702112.1;pid=914370;prot=eq;tid=945883 + scaffold_7 No
AL7G28720 aly name=fgenesh2_kg.7__2807__AT4G15160.1;pid=493374;prot=eq;tid=493374 - scaffold_7 No
AL8G01240 aly name=fgenesh2_kg.8__103__AT5G46890.1;pid=494287;prot=eq;tid=494287 + scaffold_8 No
AT1G12090 ath extensin-like protein (ELP);extensin-like protein transcript=eq;prot=eq; - 1 No
AT1G12100 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, embryo, flower, leaf, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; + 1 No
AT1G62500 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22142.1); Has 57491 Blast hits to 29077 proteins in 1537 species: Archae - 155; Bacteria - 10434; Metazoa - 25836; Fungi - 4596; Plants - 8968; Viruses - 1548; Other Eukaryotes - 5954 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; + 1 No
AT1G62510 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, cotyledon, leaf whorl, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT4G12490.1); Has 25891 Blast hits to 3864 proteins in 588 species: Archae - 46; Bacteria - 7812; Metazoa - 1674; Fungi - 617; Plants - 4225; Viruses - 1248; Other Eukaryotes - 10269 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; - 1 No
AT2G10940 ath Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: chloroplast thylakoid membrane, apoplast, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22142.1); Has 46369 Blast hits to 18572 proteins in 1334 species: Archae - 186; Bacteria - 10981; Metazoa - 15875; Fungi - 3500; Plants - 7556; Viruses - 1597; Other Eukaryotes - 6674 (source: NCBI BLink).;Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein transcript=eq;prot=eq; - 2 No
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