Gene family  

Sub-families
ORTHO000073 (136 genes in 23 species)
ORTHO000306 (70 genes in 20 species)
ORTHO001791 (35 genes in 18 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (18 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (20 genes)
gma
Glycine max (23 genes)
lja
Lotus japonicus (17 genes)
mdo
Malus domestica (40 genes)
mes
Manihot esculenta (13 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (19 genes)
osa
Oryza sativa ssp. japonica (21 genes)
osaindica
Oryza sativa ssp. indica (22 genes)
ppa
Physcomitrella patens (9 genes)
ptr
Populus trichocarpa (17 genes)
rco
Ricinus communis (13 genes)
sbi
Sorghum bicolor (25 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (20 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (15 genes)
zma
Zea mays (31 genes)



The gene family HOM000200 has 367 genes in 23 species (26 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 19, showing 20 records out of 367 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G09440 aly name=scaffold_58000002.1;pid=920798;prot=eq;tid=952311 - scaffold_580 No
AL1G36680 aly name=Al_scaffold_0001_3610;pid=881843;prot=eq;tid=913356 - scaffold_1 No
AL1G36690 aly name=fgenesh2_kg.1__3599__AT1G31280.1;pid=473645;prot=eq;tid=473645 - scaffold_1 No
AL1G42040 aly name=fgenesh2_kg.1__3931__AT1G48410.2;pid=473977;prot=eq;tid=473977 - scaffold_1 No
AL2G17690 aly name=fgenesh2_kg.2__1202__AT1G69440.1;pid=476072;prot=eq;tid=476072 - scaffold_2 No
AL4G10430 aly name=fgenesh2_kg.4__644__AT2G27040.1;pid=481584;prot=eq;tid=481584 - scaffold_4 No
AL4G12250 aly name=fgenesh2_kg.4__778__AT2G27880.1;pid=481718;prot=eq;tid=481718 - scaffold_4 No
AL4G18120 aly name=scaffold_401862.1;pid=902361;prot=eq;tid=933874 - scaffold_4 No
AL6G21300 aly name=fgenesh1_pm.C_scaffold_6001704;pid=326484;prot=eq;tid=326484 - scaffold_6 No
AL6G21410 aly name=fgenesh2_kg.6__2159__AT5G21150.1;pid=489025;prot=eq;tid=489025 + scaffold_6 No
AL8G06220 aly name=scaffold_800659.1;pid=917259;prot=eq;tid=948772 - scaffold_8 No
AT1G31280 ath An Argonaute gene;Argonaute family protein transcript=eq;prot=eq; + 1 No
AT1G31290 ath ARGONAUTE 3 (AGO3); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT1G31280.1); Has 87664 Blast hits to 32385 proteins in 1910 species: Archae - 110; Bacteria - 26465; Metazoa - 27622; Fungi - 6311; Plants - 10699; Viruses - 1201; Other Eukaryotes - 15256 (source: NCBI BLink).;ARGONAUTE 3 transcript=eq;prot=eq; + 1 No
AT1G48410 ath Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.;Stabilizer of iron transporter SufD / Polynucleotidyl transferase transcript=eq;prot=eq; - 1 No
AT1G69440 ath Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds.;Argonaute family protein transcript=eq;prot=eq; - 1 No
AT2G27040 ath AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.;Argonaute family protein transcript=eq;prot=eq; - 2 No
AT2G27880 ath ARGONAUTE 5 (AGO5); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Argonaute/Dicer protein, PAZ (InterPro:IPR003100); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT1G48410.1); Has 2539 Blast hits to 2399 proteins in 280 species: Archae - 0; Bacteria - 80; Metazoa - 1295; Fungi - 341; Plants - 581; Viruses - 6; Other Eukaryotes - 236 (source: NCBI BLink).;Argonaute family protein transcript=eq;prot=eq; + 2 No
AT2G32940 ath Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.;Argonaute family protein transcript=eq;prot=eq; - 2 No
AT5G21030 ath PAZ domain-containing protein / piwi domain-containing protein; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Argonaute family protein (TAIR:AT5G21150.1); Has 1838 Blast hits to 1796 proteins in 202 species: Archae - 2; Bacteria - 0; Metazoa - 963; Fungi - 280; Plants - 458; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).;PAZ domain-containing protein / piwi domain-containing protein transcript=eq;prot=eq; - 5 No
AT5G21150 ath AGO9-dependent sRNA silencing is crucial to specify cell fate in the Arabidopsis ovule. AGO9 is expressed in reproductive companion cells but not in the associated male or female gametes or their precursors. Therefore, AGO9 acts non-cell autonomously to silencing the activity of TEs activity in the female gametophyte.;Argonaute family protein transcript=eq;prot=eq; + 5 No
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