Gene family  

Sub-families
ORTHO001569 (37 genes in 10 species)
ORTHO003463 (29 genes in 20 species)
ORTHO009752 (20 genes in 10 species)
View all sub-families (45)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (17 genes)
cpa
Carica papaya (8 genes)
fve
Fragaria vesca (23 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (63 genes)
mes
Manihot esculenta (15 genes)
mtr
Medicago truncatula (7 genes)
osa
Oryza sativa ssp. japonica (18 genes)
osaindica
Oryza sativa ssp. indica (26 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (41 genes)
rco
Ricinus communis (16 genes)
sbi
Sorghum bicolor (22 genes)
smo
Selaginella moellendorffii (7 genes)
tca
Theobroma cacao (18 genes)
vvi
Vitis vinifera (31 genes)
zma
Zea mays (21 genes)



The gene family HOM000190 has 393 genes in 20 species (13 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 20, showing 20 records out of 393 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G04140 aly name=Al_scaffold_0004_400;pid=868237;prot=eq;tid=899750 - scaffold_4 No
AL4G09140 aly name=fgenesh1_pg.C_scaffold_4000679;pid=344337;prot=eq;tid=344337 - scaffold_4 No
AL4G09160 aly name=fgenesh2_kg.4__576__AT2G26560.1;pid=481516;prot=eq;tid=481516 - scaffold_4 No
AL4G25630 aly name=scaffold_402664.1;pid=903163;prot=eq;tid=934676 - scaffold_4 No
AL5G25040 aly name=fgenesh2_kg.5__1904__AT3G54950.1;pid=485912;prot=eq;tid=485912 - scaffold_5 No
AL5G34350 aly name=scaffold_503607.1;pid=907903;prot=eq;tid=939416 + scaffold_5 No
AL7G03660 aly name=fgenesh2_kg.7__349__AT4G37050.1;pid=490916;prot=eq;tid=490916 - scaffold_7 No
AL7G03670 aly name=fgenesh2_kg.7__350__AT4G37070.2;pid=490917;prot=eq;tid=490917 - scaffold_7 No
AL7G11840 aly name=fgenesh2_kg.7__1213__AT4G29800.1;pid=491780;prot=eq;tid=491780 + scaffold_7 No
AL8G06480 aly name=fgenesh1_pm.C_scaffold_8000388;pid=331045;prot=eq;tid=331045 + scaffold_8 No
AT2G26560 ath Encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. Plays a role in cell death and differentially affects the accumulation of oxylipins. Contributes to resistance to virus.;phospholipase A 2A transcript=eq;prot=eq; - 2 No
AT2G39220 ath PATATIN-like protein 6 (PLP6); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-like protein 6 (TAIR:AT3G54950.1); Has 1294 Blast hits to 1292 proteins in 232 species: Archae - 0; Bacteria - 327; Metazoa - 139; Fungi - 43; Plants - 635; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).;PATATIN-like protein 6 transcript=eq;prot=eq; - 2 No
AT3G54950 ath patatin-like protein 6 (PLA IIIA); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 1058 Blast hits to 1055 proteins in 202 species: Archae - 0; Bacteria - 325; Metazoa - 24; Fungi - 32; Plants - 544; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).;patatin-like protein 6 transcript=eq;prot=eq; - 3 No
AT3G63200 ath PATATIN-like protein 9 (PLP9); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;PATATIN-like protein 9 transcript=eq;prot=eq; + 3 No
AT4G29800 ath PATATIN-like protein 8 (PLP8); INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-like protein 6 (TAIR:AT3G54950.1).;PATATIN-like protein 8 transcript=eq;prot=eq; - 4 No
AT4G37050 ath Patatin-related phospholipase A. Expressed in the floral gynaecium and is induced by abscisic acid (ABA) or phosphate deficiency in roots.;PATATIN-like protein 4 transcript=eq;prot=eq; - 4 No
AT4G37060 ath Patatin-related phospholipase A. Expressed weakly in roots, cotyledons, and leaves but is transcriptionally induced by auxin. Phosphorylation by calcium-dependent protein kinases in vitro enhances its activity.;PATATIN-like protein 5 transcript=eq;prot=eq; - 4 No
AT4G37070 ath Patatin-related phospholipase A. Expressed strongly and exclusively in roots. AtplaIVA-null mutants have reduced lateral root development. Phosphorylation by calcium-dependent protein kinases in vitro enhances its activity.;Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein transcript=eq;prot=eq; - 4 No
AT5G43590 ath Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 5 (TAIR:AT4G37060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein transcript=eq;prot=eq; - 5 No
BD1G00300 bdi pid=Bradi1g00300.1;tid=Bradi1g00300.1;GeneName=Bradi1g00300;transcript=eq;prot=eq + Bd1 No
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