Gene family  

Sub-families
ORTHO000277 (73 genes in 2 species)
ORTHO001085 (42 genes in 24 species)
ORTHO003645 (29 genes in 25 species)
View all sub-families (20)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (21 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (18 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (14 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (40 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (197 genes)



The gene family HOM000184 has 401 genes in 25 species (22 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 21, showing 20 records out of 401 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G30100 aly name=fgenesh2_kg.1__3084__AT1G29260.1;pid=473130;prot=eq;tid=473130 - scaffold_1 No
AL3G36680 aly name=scaffold_303900.1;pid=899930;prot=eq;tid=931443 - scaffold_3 No
AL3G37400 aly name=fgenesh2_kg.3__3262__AT2G16780.1;pid=480561;prot=eq;tid=480561 - scaffold_3 No
AL7G05910 aly name=scaffold_700622.1;pid=912880;prot=eq;tid=944393 + scaffold_7 No
AL7G11950 aly name=fgenesh2_kg.7__1222__AT4G29730.1;pid=491789;prot=eq;tid=491789 + scaffold_7 No
AL8G24050 aly name=fgenesh2_kg.8__1748__AT5G58230.1;pid=495932;prot=eq;tid=495932 + scaffold_8 No
AT1G29260 ath Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function.;peroxin 7 transcript=eq;prot=eq; + 1 No
AT2G16780 ath Encodes a WD-40 repeat protein similar to yeast MSI1.;Transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 2 No
AT2G19520 ath Controls flowering.;Transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; + 2 No
AT4G29730 ath cell cycle-related repressor genes encoding WD-repeat proteins.;nucleosome/chromatin assembly factor group C5 transcript=eq;prot=eq; - 4 No
AT4G35050 ath Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase;Transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 4 No
AT5G58230 ath Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 5 No
BD1G13930 bdi p55 like (p55L) pid=Bradi1g13930.1;tid=Bradi1g13930.1;GeneName=Bradi1g13930;Name=Bdp55L1;transcript=eq;prot=eq + Bd1 No
BD1G22390 bdi small conjugating protein-specific protease activity (Blast2GO) pid=Bradi1g22390.1;tid=Bradi1g22390.1;GeneName=Bradi1g22390;transcript=eq;prot=eq + Bd1 No
BD1G41660 bdi small conjugating protein-specific protease activity (Blast2GO) pid=Bradi1g41660.1;tid=Bradi1g41660.1;GeneName=Bradi1g41660;transcript=eq;prot=eq - Bd1 No
BD1G46820 bdi SUMO-specific protease activity (Blast2GO) pid=Bradi1g46820.1;tid=Bradi1g46820.1;GeneName=Bradi1g46820;transcript=eq;prot=eq + Bd1 No
BD1G52130 bdi pid=Bradi1g52130.1;tid=Bradi1g52130.1;GeneName=Bradi1g52130;transcript=eq;prot=eq - Bd1 Yes
BD1G74110 bdi pid=Bradi1g74110.1;tid=Bradi1g74110.1;GeneName=Bradi1g74110;transcript=eq;prot=eq - Bd1 No
BD2G17140 bdi SUMO-specific protease activity (Blast2GO) pid=Bradi2g17140.1;tid=Bradi2g17140.1;GeneName=Bradi2g17140;transcript=eq;prot=eq - Bd2 No
BD2G22580 bdi pid=Bradi2g22580.1;tid=Bradi2g22580.1;GeneName=Bradi2g22580;transcript=eq;prot=eq - Bd2 No
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