Gene family  

Sub-families
ORTHO000050 (159 genes in 24 species)
ORTHO002617 (31 genes in 22 species)
ORTHO003511 (29 genes in 22 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (18 genes)
ath
Arabidopsis thaliana (18 genes)
bdi
Brachypodium distachyon (15 genes)
cpa
Carica papaya (12 genes)
cre
Chlamydomonas reinhardtii (5 genes)
fve
Fragaria vesca (14 genes)
gma
Glycine max (37 genes)
lja
Lotus japonicus (27 genes)
mdo
Malus domestica (50 genes)
mes
Manihot esculenta (19 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (9 genes)
olu
Ostreococcus lucimarinus (7 genes)
osa
Oryza sativa ssp. japonica (18 genes)
osaindica
Oryza sativa ssp. indica (19 genes)
ota
Ostreococcus tauri (8 genes)
ppa
Physcomitrella patens (13 genes)
ptr
Populus trichocarpa (21 genes)
rco
Ricinus communis (12 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (14 genes)
vca
Volvox carteri (7 genes)
vvi
Vitis vinifera (14 genes)
zma
Zea mays (35 genes)



The gene family HOM000179 has 414 genes in 25 species (30 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 21, showing 20 records out of 414 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G13800 aly name=fgenesh2_kg.1__1425__AT1G13180.1;pid=471471;prot=eq;tid=471471 + scaffold_1 No
AL1G19360 aly name=fgenesh2_kg.1__2017__AT1G18450.1;pid=472063;prot=eq;tid=472063 + scaffold_1 No
AL1G43140 aly name=fgenesh2_kg.1__4019__AT1G49240.1;pid=474065;prot=eq;tid=474065 + scaffold_1 No
AL3G12570 aly name=fgenesh2_kg.3__1268__AT3G12110.1;pid=478567;prot=eq;tid=478567 + scaffold_3 No
AL3G20380 aly name=fgenesh1_pg.C_scaffold_3001782;pid=342019;prot=eq;tid=342019 + scaffold_3 No
AL4G23370 aly name=fgenesh1_pm.C_scaffold_4001519;pid=321462;prot=eq;tid=321462 + scaffold_4 No
AL4G23430 aly name=fgenesh1_pm.C_scaffold_4001522;pid=321465;prot=eq;tid=321465 + scaffold_4 No
AL4G29270 aly name=Al_scaffold_0004_2842;pid=870679;prot=eq;tid=902192 + scaffold_4 No
AL4G29280 aly name=scaffold_403057.1;pid=903556;prot=eq;tid=935069 + scaffold_4 No
AL4G29290 aly name=fgenesh1_pg.C_scaffold_4002350;pid=346008;prot=eq;tid=346008 + scaffold_4 No
AL5G05770 aly name=fgenesh2_kg.5__477__AT3G27000.1;pid=484485;prot=eq;tid=484485 - scaffold_5 No
AL5G10400 aly name=fgenesh2_kg.5__752__AT3G33520.1;pid=484760;prot=eq;tid=484760 - scaffold_5 No
AL5G14950 aly name=fgenesh2_kg.5__1015__AT3G46520.1;pid=485023;prot=eq;tid=485023 + scaffold_5 No
AL5G23800 aly name=fgenesh1_pm.C_scaffold_5001458;pid=323914;prot=eq;tid=323914 + scaffold_5 No
AL5G31540 aly name=fgenesh2_kg.5__2549__AT3G60830.1;pid=486557;prot=eq;tid=486557 + scaffold_5 No
AL6G09470 aly name=fgenesh2_kg.6__937__AT5G09810.1;pid=487803;prot=eq;tid=487803 + scaffold_6 No
AL8G21630 aly name=fgenesh2_kg.8__1522__AT5G56180.1;pid=495706;prot=eq;tid=495706 - scaffold_8 No
AL8G25530 aly name=fgenesh2_kg.8__1881__AT5G59370.1;pid=496065;prot=eq;tid=496065 + scaffold_8 No
AT1G13180 ath Mutant has defect in trichome cell expansion and actin organization resulting in a distorted trichome phenotype.;Actin-like ATPase superfamily protein transcript=eq;prot=eq; + 1 No
AT1G18450 ath Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.;actin-related protein 4 transcript=eq;prot=eq; + 1 No
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