Gene family  

Sub-families
ORTHO000508 (56 genes in 24 species)
ORTHO002236 (33 genes in 23 species)
ORTHO003390 (29 genes in 22 species)
View all sub-families (33)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (18 genes)
ath
Arabidopsis thaliana (17 genes)
bdi
Brachypodium distachyon (19 genes)
cpa
Carica papaya (16 genes)
cre
Chlamydomonas reinhardtii (7 genes)
fve
Fragaria vesca (15 genes)
gma
Glycine max (31 genes)
lja
Lotus japonicus (21 genes)
mdo
Malus domestica (23 genes)
mes
Manihot esculenta (27 genes)
mrcc299
Micromonas sp. RCC299 (10 genes)
mtr
Medicago truncatula (12 genes)
olu
Ostreococcus lucimarinus (8 genes)
osa
Oryza sativa ssp. japonica (20 genes)
osaindica
Oryza sativa ssp. indica (20 genes)
ota
Ostreococcus tauri (8 genes)
ppa
Physcomitrella patens (13 genes)
ptr
Populus trichocarpa (32 genes)
rco
Ricinus communis (17 genes)
sbi
Sorghum bicolor (17 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (19 genes)
vca
Volvox carteri (7 genes)
vvi
Vitis vinifera (16 genes)
zma
Zea mays (25 genes)



The gene family HOM000171 has 424 genes in 25 species (34 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 22, showing 20 records out of 424 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G04760 aly name=scaffold_300526.1;pid=896556;prot=eq;tid=928069 + scaffold_3 No
AL3G09480 aly name=fgenesh2_kg.3__947__AT3G09320.1;pid=478246;prot=eq;tid=478246 - scaffold_3 No
AL3G20170 aly name=fgenesh2_kg.3__2068__AT3G18620.1;pid=479367;prot=eq;tid=479367 + scaffold_3 No
AL4G27930 aly name=fgenesh2_kg.4__2225__AT2G40990.1;pid=483165;prot=eq;tid=483165 - scaffold_4 No
AL4G33280 aly name=scaffold_403482.1;pid=903981;prot=eq;tid=935494 - scaffold_4 No
AL5G05710 aly name=fgenesh2_kg.5__473__AT3G26935.1;pid=484481;prot=eq;tid=484481 - scaffold_5 No
AL5G17710 aly name=scaffold_501833.1;pid=906129;prot=eq;tid=937642 + scaffold_5 No
AL5G21050 aly name=scaffold_502193.1;pid=906489;prot=eq;tid=938002 + scaffold_5 No
AL5G27240 aly name=scaffold_502847.1;pid=907143;prot=eq;tid=938656 + scaffold_5 No
AL5G27280 aly name=fgenesh2_kg.5__2128__AT3G56930.1;pid=486136;prot=eq;tid=486136 + scaffold_5 No
AL5G31510 aly name=scaffold_503314.1;pid=907610;prot=eq;tid=939123 - scaffold_5 No
AL6G03600 aly name=scaffold_600368.1;pid=908311;prot=eq;tid=939824 - scaffold_6 No
AL6G04500 aly name=scaffold_600457.1;pid=908400;prot=eq;tid=939913 + scaffold_6 Yes
AL6G04580 aly name=fgenesh1_pm.C_scaffold_6000361;pid=325141;prot=eq;tid=325141 + scaffold_6 No
AL6G40790 aly name=scaffold_604213.1;pid=912156;prot=eq;tid=943669 + scaffold_6 No
AL7G17510 aly name=scaffold_701866.1;pid=914124;prot=eq;tid=945637 - scaffold_7 No
AL7G36650 aly name=scaffold_703854.1;pid=916112;prot=eq;tid=947625 - scaffold_7 No
AL8G13940 aly name=fgenesh2_kg.8__876__AT5G50020.1;pid=495060;prot=eq;tid=495060 + scaffold_8 No
AT2G40990 ath DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G56920.1); Has 5135 Blast hits to 5125 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 2229; Fungi - 738; Plants - 856; Viruses - 0; Other Eukaryotes - 1312 (source: NCBI BLink).;DHHC-type zinc finger family protein transcript=eq;prot=eq; - 2 No
AT3G04970 ath DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G50020.2); Has 5080 Blast hits to 5078 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2181; Fungi - 755; Plants - 829; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).;DHHC-type zinc finger family protein transcript=eq;prot=eq; + 3 No
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