Gene family  

Sub-families
ORTHO004923 (26 genes in 19 species)
ORTHO007027 (23 genes in 16 species)
ORTHO007225 (23 genes in 15 species)
View all sub-families (56)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (14 genes)
ath
Arabidopsis thaliana (14 genes)
bdi
Brachypodium distachyon (27 genes)
cpa
Carica papaya (16 genes)
fve
Fragaria vesca (12 genes)
gma
Glycine max (48 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (29 genes)
mes
Manihot esculenta (29 genes)
mtr
Medicago truncatula (16 genes)
osa
Oryza sativa ssp. japonica (25 genes)
osaindica
Oryza sativa ssp. indica (24 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (34 genes)
rco
Ricinus communis (17 genes)
sbi
Sorghum bicolor (28 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (21 genes)
vvi
Vitis vinifera (10 genes)
zma
Zea mays (42 genes)



The gene family HOM000168 has 427 genes in 20 species (27 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 22, showing 20 records out of 427 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G09950 aly name=fgenesh2_kg.675__1__AT5G57520.1;pid=497512;prot=eq;tid=497512 + scaffold_675 No
AL1G27960 aly name=fgenesh2_kg.1__2838__AT1G24625.1;pid=472884;prot=eq;tid=472884 + scaffold_1 No
AL2G13030 aly name=fgenesh2_kg.2__846__AT1G66140.1;pid=475716;prot=eq;tid=475716 - scaffold_2 No
AL2G14790 aly name=fgenesh2_kg.2__927__AT1G67030.1;pid=475797;prot=eq;tid=475797 + scaffold_2 No
AL2G16500 aly name=scaffold_201674.1;pid=894600;prot=eq;tid=926113 - scaffold_2 No
AL2G29030 aly name=fgenesh2_kg.2__2304__AT1G80730.1;pid=477174;prot=eq;tid=477174 + scaffold_2 No
AL4G29110 aly name=scaffold_403039.1;pid=903538;prot=eq;tid=935051 + scaffold_4 No
AL5G28590 aly name=fgenesh2_kg.5__2251__AT3G58070.1;pid=486259;prot=eq;tid=486259 - scaffold_5 No
AL6G00180 aly name=fgenesh2_kg.6__17__AT5G01860.1;pid=486883;prot=eq;tid=486883 - scaffold_6 No
AL6G06310 aly name=fgenesh2_kg.6__609__AT5G06650.1;pid=487475;prot=eq;tid=487475 + scaffold_6 No
AL6G10710 aly name=scaffold_601111.1;pid=909054;prot=eq;tid=940567 + scaffold_6 No
AL6G13760 aly name=fgenesh2_kg.6__1363__AT5G14010.1;pid=488229;prot=eq;tid=488229 + scaffold_6 No
AL6G25230 aly name=scaffold_602617.1;pid=910560;prot=eq;tid=942073 + scaffold_6 No
AL8G12060 aly name=scaffold_801220.1;pid=917820;prot=eq;tid=949333 + scaffold_8 No
AT1G24625 ath Encodes a zinc finger protein containing only a single zinc finger.;zinc finger protein 7 transcript=eq;prot=eq; - 1 No
AT1G66140 ath Encodes a zinc finger protein containing only a single zinc finger.;zinc finger protein 4 transcript=eq;prot=eq; - 1 No
AT1G67030 ath Encodes a zinc finger protein containing only a single zinc finger.;zinc finger protein 6 transcript=eq;prot=eq; + 1 No
AT1G68360 ath C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 6 (TAIR:AT1G67030.1); Has 1137 Blast hits to 1135 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 1124; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;C2H2 and C2HC zinc fingers superfamily protein transcript=eq;prot=eq; - 1 No
AT1G80730 ath Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation.;zinc-finger protein 1 transcript=eq;prot=eq; - 1 No
AT2G41940 ath Encodes a zinc finger protein containing only a single zinc finger.;zinc finger protein 8 transcript=eq;prot=eq; + 2 No
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