Gene family  

Sub-families
ORTHO000160 (90 genes in 20 species)
ORTHO000732 (48 genes in 14 species)
ORTHO006309 (24 genes in 18 species)
View all sub-families (20)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (18 genes)
ath
Arabidopsis thaliana (16 genes)
bdi
Brachypodium distachyon (19 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (35 genes)
fve
Fragaria vesca (21 genes)
gma
Glycine max (27 genes)
lja
Lotus japonicus (30 genes)
mdo
Malus domestica (44 genes)
mes
Manihot esculenta (15 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (30 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (18 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (20 genes)
ptr
Populus trichocarpa (22 genes)
rco
Ricinus communis (12 genes)
sbi
Sorghum bicolor (17 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (10 genes)
vca
Volvox carteri (12 genes)
vvi
Vitis vinifera (15 genes)
zma
Zea mays (22 genes)



The gene family HOM000162 has 440 genes in 25 species (70 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 22, showing 20 records out of 440 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G00950 aly name=Al_scaffold_0001_93;pid=878326;prot=eq;tid=909839 - scaffold_1 No
AL1G08840 aly name=fgenesh2_kg.1__963__AT1G09200.1;pid=471009;prot=eq;tid=471009 - scaffold_1 No
AL1G20940 aly name=fgenesh2_kg.1__2168__AT1G19890.1;pid=472214;prot=eq;tid=472214 + scaffold_1 No
AL1G25830 aly name=scaffold_102743.1;pid=889949;prot=eq;tid=921462 - scaffold_1 No
AL1G46160 aly name=scaffold_104906.1;pid=892112;prot=eq;tid=923625 - scaffold_1 No
AL1G48010 aly name=scaffold_105114.1;pid=892320;prot=eq;tid=923833 + scaffold_1 Yes
AL1G52760 aly name=scaffold_105618.1;pid=892824;prot=eq;tid=924337 - scaffold_1 No
AL2G24530 aly name=fgenesh1_pm.C_scaffold_2001522;pid=316489;prot=eq;tid=316489 + scaffold_2 No
AL3G03000 aly name=fgenesh2_kg.3__303__AT3G03570.1;pid=477602;prot=eq;tid=477602 + scaffold_3 Yes
AL3G31390 aly name=fgenesh2_kg.3__2903__AT1G13370.1;pid=480202;prot=eq;tid=480202 + scaffold_3 No
AL5G06430 aly name=fgenesh2_kg.5__517__AT3G27360.1;pid=484525;prot=eq;tid=484525 - scaffold_5 No
AL6G10100 aly name=scaffold_601051.1;pid=908994;prot=eq;tid=940507 - scaffold_6 No
AL6G10110 aly name=fgenesh2_kg.6__1003__AT5G10400.1;pid=487869;prot=eq;tid=487869 - scaffold_6 No
AL6G10720 aly name=fgenesh2_kg.6__1062__AT5G10980.1;pid=487928;prot=eq;tid=487928 - scaffold_6 No
AL6G12550 aly name=scaffold_601295.1;pid=909238;prot=eq;tid=940751 + scaffold_6 No
AL6G30120 aly name=fgenesh2_kg.6__2856__AT1G13370.1;pid=489722;prot=eq;tid=489722 + scaffold_6 No
AL7G02300 aly name=fgenesh1_pm.C_scaffold_7000184;pid=327957;prot=eq;tid=327957 - scaffold_7 No
AL7G02350 aly name=fgenesh2_kg.7__227__AT4G40050.1;pid=490794;prot=eq;tid=490794 + scaffold_7 Yes
AT1G01370 ath Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.;Histone superfamily protein transcript=eq;prot=eq; + 1 No
AT1G09200 ath Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 14599 Blast hits to 14591 proteins in 7243 species: Archae - 0; Bacteria - 0; Metazoa - 10602; Fungi - 2038; Plants - 1256; Viruses - 0; Other Eukaryotes - 703 (source: NCBI BLink).;Histone superfamily protein transcript=eq;prot=eq; - 1 No
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