Gene family  

Sub-families
ORTHO004268 (27 genes in 18 species)
ORTHO005065 (26 genes in 18 species)
ORTHO006078 (25 genes in 18 species)
View all sub-families (53)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (18 genes)
ath
Arabidopsis thaliana (17 genes)
bdi
Brachypodium distachyon (19 genes)
cpa
Carica papaya (15 genes)
fve
Fragaria vesca (17 genes)
gma
Glycine max (55 genes)
lja
Lotus japonicus (19 genes)
mdo
Malus domestica (55 genes)
mes
Manihot esculenta (24 genes)
mtr
Medicago truncatula (41 genes)
osa
Oryza sativa ssp. japonica (17 genes)
osaindica
Oryza sativa ssp. indica (15 genes)
ppa
Physcomitrella patens (21 genes)
ptr
Populus trichocarpa (24 genes)
rco
Ricinus communis (15 genes)
sbi
Sorghum bicolor (25 genes)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (12 genes)
vvi
Vitis vinifera (17 genes)
zma
Zea mays (28 genes)



The gene family HOM000158 has 459 genes in 20 species (42 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 23, showing 20 records out of 459 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01000 aly name=scaffold_100116.1;pid=887322;prot=eq;tid=918835 + scaffold_1 Yes
AL1G01070 aly name=fgenesh2_kg.1__101__AT1G01260.1;pid=470147;prot=eq;tid=470147 - scaffold_1 No
AL1G10620 aly name=fgenesh2_kg.1__1138__AT1G10610.1;pid=471184;prot=eq;tid=471184 + scaffold_1 No
AL1G33940 aly name=scaffold_103634.1;pid=890840;prot=eq;tid=922353 - scaffold_1 No
AL4G02170 aly name=fgenesh2_kg.4__196__AT2G22750.1;pid=481136;prot=eq;tid=481136 + scaffold_4 No
AL4G02180 aly name=fgenesh2_kg.4__197__AT2G22760.1;pid=481137;prot=eq;tid=481137 + scaffold_4 No
AL4G02190 aly name=fgenesh2_kg.4__198__AT2G22770.1;pid=481138;prot=eq;tid=481138 + scaffold_4 No
AL4G11910 aly name=fgenesh2_kg.4__753__AT2G28160.1;pid=481693;prot=eq;tid=481693 - scaffold_4 No
AL4G34640 aly name=fgenesh2_kg.4__2868__AT2G46510.1;pid=483808;prot=eq;tid=483808 - scaffold_4 No
AL6G40760 aly name=Al_scaffold_0006_3930;pid=864421;prot=eq;tid=895934 + scaffold_6 No
AL7G07240 aly name=scaffold_700763.1;pid=913021;prot=eq;tid=944534 - scaffold_7 Yes
AL7G11720 aly name=fgenesh2_kg.7__1196__AT4G29930.1;pid=491763;prot=eq;tid=491763 - scaffold_7 No
AL7G21370 aly name=fgenesh1_pg.C_scaffold_7001824;pid=354651;prot=eq;tid=354651 - scaffold_7 No
AL7G25020 aly name=fgenesh2_kg.7__2520__AT4G17880.1;pid=493087;prot=eq;tid=493087 + scaffold_7 No
AL7G26840 aly name=scaffold_702851.1;pid=915109;prot=eq;tid=946622 - scaffold_7 No
AL8G01320 aly name=Al_scaffold_0008_132;pid=883868;prot=eq;tid=915381 - scaffold_8 No
AL8G01410 aly name=scaffold_800152.1;pid=916752;prot=eq;tid=948265 - scaffold_8 No
AL8G22830 aly name=fgenesh2_kg.8__1627__AT5G57150.1;pid=495811;prot=eq;tid=495811 + scaffold_8 No
AT1G01260 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: ABA-inducible BHLH-type transcription factor (TAIR:AT2G46510.1); Has 3647 Blast hits to 3273 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 174; Fungi - 93; Plants - 3336; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 1 No
AT1G10610 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G16910.1); Has 1439 Blast hits to 1421 proteins in 116 species: Archae - 0; Bacteria - 21; Metazoa - 63; Fungi - 6; Plants - 1338; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 1 No
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