Gene family  

Sub-families
ORTHO003324 (29 genes in 18 species)
ORTHO008661 (21 genes in 16 species)
ORTHO008699 (21 genes in 13 species)
View all sub-families (46)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (18 genes)
ath
Arabidopsis thaliana (18 genes)
bdi
Brachypodium distachyon (21 genes)
cpa
Carica papaya (19 genes)
fve
Fragaria vesca (17 genes)
gma
Glycine max (61 genes)
lja
Lotus japonicus (21 genes)
mdo
Malus domestica (45 genes)
mes
Manihot esculenta (32 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (22 genes)
osa
Oryza sativa ssp. japonica (21 genes)
osaindica
Oryza sativa ssp. indica (26 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (30 genes)
rco
Ricinus communis (19 genes)
sbi
Sorghum bicolor (20 genes)
smo
Selaginella moellendorffii (8 genes)
tca
Theobroma cacao (19 genes)
vvi
Vitis vinifera (18 genes)
zma
Zea mays (27 genes)



The gene family HOM000150 has 473 genes in 21 species (26 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 24, showing 20 records out of 473 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03150 aly name=fgenesh2_kg.1__311__AT1G03840.2;pid=470357;prot=eq;tid=470357 - scaffold_1 No
AL1G15390 aly name=fgenesh1_pm.C_scaffold_1001236;pid=312456;prot=eq;tid=312456 + scaffold_1 No
AL1G27850 aly name=Al_scaffold_0001_2743;pid=880976;prot=eq;tid=912489 - scaffold_1 No
AL1G35820 aly name=fgenesh2_kg.1__3547__AT1G34370.2;pid=473593;prot=eq;tid=473593 + scaffold_1 No
AL1G49630 aly name=Al_scaffold_0001_4885;pid=883118;prot=eq;tid=914631 - scaffold_1 No
AL2G16070 aly name=fgenesh2_kg.2__1036__AT1G68130.1;pid=475906;prot=eq;tid=475906 - scaffold_2 No
AL3G14490 aly name=fgenesh2_kg.3__1485__AT3G13810.1;pid=478784;prot=eq;tid=478784 + scaffold_3 No
AL5G01040 aly name=fgenesh2_kg.5__108__AT2G01940.1;pid=484116;prot=eq;tid=484116 + scaffold_5 No
AL5G01220 aly name=scaffold_500135.1;pid=904431;prot=eq;tid=935944 + scaffold_5 No
AL5G01240 aly name=scaffold_500136.1;pid=904432;prot=eq;tid=935945 - scaffold_5 No
AL5G13380 aly name=scaffold_501386.1;pid=905682;prot=eq;tid=937195 - scaffold_5 No
AL5G20210 aly name=fgenesh2_kg.5__1410__AT3G50700.1;pid=485418;prot=eq;tid=485418 + scaffold_5 No
AL6G02250 aly name=fgenesh2_kg.6__219__AT5G03150.1;pid=487085;prot=eq;tid=487085 + scaffold_6 No
AL6G22630 aly name=fgenesh1_pm.C_scaffold_6001805;pid=326585;prot=eq;tid=326585 - scaffold_6 No
AL6G38690 aly name=fgenesh1_pg.C_scaffold_6003159;pid=352566;prot=eq;tid=352566 + scaffold_6 No
AL8G05760 aly name=scaffold_800604.1;pid=917204;prot=eq;tid=948717 - scaffold_8 No
AL8G26650 aly name=Al_scaffold_0008_2545;pid=886281;prot=eq;tid=917794 + scaffold_8 No
AL8G33910 aly name=fgenesh2_kg.8__2743__AT5G66730.1;pid=496927;prot=eq;tid=496927 + scaffold_8 No
AT1G03840 ath MGP is a nuclear-localized putative transcription factor with three zinc finger domains. MGP can interact with three proteins implicated in root patterning: SCR, SHR, and JKD in Y2H assays, and these interactions depend on the first zinc finger in MGP. MGP appears to be a direct transcriptional target of SHR and SCR, based on promoter binding assays, though it is not expressed in the QC, based on in situ hybridizations.;C2H2 and C2HC zinc fingers superfamily protein transcript=eq;prot=eq; - 1 No
AT1G14580 ath C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 4 (TAIR:AT2G02080.1); Has 50611 Blast hits to 19416 proteins in 277 species: Archae - 0; Bacteria - 3; Metazoa - 47960; Fungi - 322; Plants - 829; Viruses - 2; Other Eukaryotes - 1495 (source: NCBI BLink).;C2H2-like zinc finger protein transcript=eq;prot=eq; + 1 No
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