Gene family  

Sub-families
ORTHO007701 (22 genes in 10 species)
ORTHO008417 (21 genes in 9 species)
ORTHO011580 (17 genes in 10 species)
View all sub-families (62)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (12 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (32 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (57 genes)
mes
Manihot esculenta (5 genes)
mtr
Medicago truncatula (46 genes)
osa
Oryza sativa ssp. japonica (17 genes)
osaindica
Oryza sativa ssp. indica (32 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (26 genes)
rco
Ricinus communis (11 genes)
sbi
Sorghum bicolor (153 genes)
tca
Theobroma cacao (7 genes)
vvi
Vitis vinifera (9 genes)
zma
Zea mays (26 genes)



The gene family HOM000148 has 478 genes in 20 species (107 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 24, showing 20 records out of 478 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G34920 aly name=Al_scaffold_0001_3436;pid=881669;prot=eq;tid=913182 - scaffold_1 No
AL1G40470 aly name=scaffold_104298.1;pid=891504;prot=eq;tid=923017 + scaffold_1 No
AL2G02250 aly name=fgenesh1_pg.C_scaffold_2000172;pid=338073;prot=eq;tid=338073 + scaffold_2 No
AL7G35270 aly name=Al_scaffold_0007_3409;pid=859910;prot=eq;tid=891423 + scaffold_7 Yes
AL8G08440 aly name=scaffold_800877.1;pid=917477;prot=eq;tid=948990 + scaffold_8 Yes
AL8G08620 aly name=fgenesh1_pm.C_scaffold_8000483;pid=331140;prot=eq;tid=331140 - scaffold_8 No
AT1G36095 ath DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 518 Blast hits to 485 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 505; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;DNA binding transcript=eq;prot=eq; - 1 No
AT1G43260 ath hAT transposon superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT5G31412.1); Has 599 Blast hits to 592 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants - 577; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).;hAT transposon superfamily protein transcript=eq;prot=eq; + 1 No
AT1G79740 ath hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).;hAT transposon superfamily transcript=eq;prot=eq; - 1 No
AT3G13010 ath hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 542 Blast hits to 530 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 539; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;hAT transposon superfamily protein transcript=eq;prot=eq; - 3 No
AT3G13020 ath hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13030.3); Has 668 Blast hits to 634 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 657; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;hAT transposon superfamily protein transcript=eq;prot=eq; - 3 No
AT3G13030 ath hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT3G13020.1); Has 625 Blast hits to 607 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 623; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;hAT transposon superfamily protein transcript=eq;prot=eq; - 3 No
AT3G17450 ath hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink).;hAT dimerisation domain-containing protein transcript=eq;prot=eq; - 3 No
AT3G22220 ath hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 845 Blast hits to 775 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 835; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;hAT transposon superfamily transcript=eq;prot=eq; - 3 No
AT4G08267 ath hAT transposon superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF659 (InterPro:IPR007021); Has 115 Blast hits to 115 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;hAT transposon superfamily protein transcript=eq;prot=eq; + 4 Yes
AT4G15020 ath hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).;hAT transposon superfamily transcript=eq;prot=eq; + 4 No
AT5G31412 ath hAT transposon superfamily protein; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily protein (TAIR:AT1G43260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;hAT transposon superfamily protein transcript=eq;prot=eq; - 5 No
AT5G33406 ath hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).;hAT dimerisation domain-containing protein / transposase-related transcript=eq;prot=eq; - 5 No
BD1G03570 bdi pid=Bradi1g03570.1;tid=Bradi1g03570.1;GeneName=Bradi1g03570;transcript=eq;prot=eq - Bd1 No
BD1G34480 bdi pid=Bradi1g34480.1;tid=Bradi1g34480.1;GeneName=Bradi1g34480;transcript=eq;prot=eq + Bd1 No
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