Gene family  

Sub-families
ORTHO000471 (58 genes in 4 species)
ORTHO002868 (31 genes in 4 species)
ORTHO009067 (21 genes in 5 species)
View all sub-families (49)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (22 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (20 genes)
gma
Glycine max (14 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (33 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (12 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (100 genes)
ptr
Populus trichocarpa (80 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (85 genes)
tca
Theobroma cacao (128 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (13 genes)



The gene family HOM000127 has 544 genes in 18 species (139 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 28, showing 20 records out of 544 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G10450 aly name=fgenesh1_pm.C_scaffold_5000605;pid=323061;prot=eq;tid=323061 + scaffold_5 No
AL5G10520 aly name=fgenesh1_pm.C_scaffold_5000609;pid=323065;prot=eq;tid=323065 + scaffold_5 No
AL5G15650 aly name=Al_scaffold_0005_1503;pid=866024;prot=eq;tid=897537 - scaffold_5 No
AL8G01080 aly name=Al_scaffold_0008_110;pid=883846;prot=eq;tid=915359 - scaffold_8 Yes
AT1G43722 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT5G28730 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
AT5G28950 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
AT5G35695 ath CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
AT5G41980 ath CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
BD1G00320 bdi pid=Bradi1g00320.1;tid=Bradi1g00320.1;GeneName=Bradi1g00320;transcript=eq;prot=eq + Bd1 Yes
BD1G08332 bdi pid=Bradi1g08332.1;tid=Bradi1g08332.1;GeneName=Bradi1g08332;transcript=eq;prot=eq - Bd1 Yes
BD2G18390 bdi pid=Bradi2g18390.1;tid=Bradi2g18390.1;GeneName=Bradi2g18390;transcript=eq;prot=eq + Bd2 No
BD2G30425 bdi pid=Bradi2g30425.1;tid=Bradi2g30425.1;GeneName=Bradi2g30425;transcript=eq;prot=eq - Bd2 No
BD2G42200 bdi pid=Bradi2g42200.1;tid=Bradi2g42200.1;GeneName=Bradi2g42200;transcript=eq;prot=eq - Bd2 Yes
BD2G48110 bdi SKP1, subfamily Skp1 family, similar to ASK4 (ARABIDOPSIS SKP1-LIKE 4) pid=Bradi2g48110.1;tid=Bradi2g48110.1;GeneName=Bradi2g48110;transcript=eq;prot=eq - Bd2 Yes
BD3G06253 bdi pid=Bradi3g06253.1;tid=Bradi3g06253.1;GeneName=Bradi3g06253;transcript=eq;prot=eq + Bd3 No
BD3G08520 bdi pid=Bradi3g08520.1;tid=Bradi3g08520.1;GeneName=Bradi3g08520;transcript=eq;prot=eq + Bd3 Yes
BD3G08840 bdi pid=Bradi3g08840.1;tid=Bradi3g08840.1;GeneName=Bradi3g08840;transcript=eq;prot=eq + Bd3 No
BD3G11100 bdi pid=Bradi3g11100.1;tid=Bradi3g11100.1;GeneName=Bradi3g11100;transcript=eq;prot=eq - Bd3 No
BD3G26950 bdi pid=Bradi3g26950.1;tid=Bradi3g26950.1;GeneName=Bradi3g26950;transcript=eq;prot=eq - Bd3 No
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