Gene family  

Sub-families
ORTHO000974 (44 genes in 16 species)
ORTHO007333 (23 genes in 15 species)
ORTHO008994 (21 genes in 17 species)
View all sub-families (73)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (16 genes)
ath
Arabidopsis thaliana (28 genes)
bdi
Brachypodium distachyon (25 genes)
cpa
Carica papaya (11 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (34 genes)
gma
Glycine max (36 genes)
lja
Lotus japonicus (18 genes)
mdo
Malus domestica (54 genes)
mes
Manihot esculenta (27 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (41 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (33 genes)
osaindica
Oryza sativa ssp. indica (38 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (40 genes)
rco
Ricinus communis (23 genes)
sbi
Sorghum bicolor (34 genes)
smo
Selaginella moellendorffii (13 genes)
tca
Theobroma cacao (36 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (24 genes)
zma
Zea mays (26 genes)



The gene family HOM000117 has 571 genes in 25 species (46 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 29, showing 20 records out of 571 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G07680 aly name=Al_scaffold_0340_2;pid=856152;prot=eq;tid=887665 - scaffold_340 Yes
AL3G29960 aly name=fgenesh2_kg.3__2777__AT2G04260.1;pid=480076;prot=eq;tid=480076 + scaffold_3 No
AL3G30320 aly name=scaffold_303239.1;pid=899269;prot=eq;tid=930782 - scaffold_3 Yes
AL3G33420 aly name=Al_scaffold_0003_3238;pid=874597;prot=eq;tid=906110 + scaffold_3 Yes
AL3G39180 aly name=fgenesh1_pg.C_scaffold_3003209;pid=343446;prot=eq;tid=343446 - scaffold_3 No
AL3G39190 aly name=scaffold_304162.1;pid=900192;prot=eq;tid=931705 - scaffold_3 No
AL3G39200 aly name=scaffold_304163.1;pid=900193;prot=eq;tid=931706 - scaffold_3 Yes
AL4G34760 aly name=fgenesh1_pg.C_scaffold_4002814;pid=346472;prot=eq;tid=346472 - scaffold_4 No
AL5G07940 aly name=scaffold_500834.1;pid=905130;prot=eq;tid=936643 + scaffold_5 No
AL5G20580 aly name=scaffold_502143.1;pid=906439;prot=eq;tid=937952 + scaffold_5 No
AL6G17670 aly name=fgenesh1_pg.C_scaffold_6001475;pid=350882;prot=eq;tid=350882 - scaffold_6 No
AL6G17690 aly name=fgenesh1_pg.C_scaffold_6001478;pid=350885;prot=eq;tid=350885 - scaffold_6 No
AL6G37310 aly name=fgenesh2_kg.6__3315__AT4G05370.1;pid=490181;prot=eq;tid=490181 + scaffold_6 Yes
AL6G37320 aly name=fgenesh2_kg.6__3316__AT4G05380.1;pid=490182;prot=eq;tid=490182 + scaffold_6 No
AL8G09060 aly name=Al_scaffold_0008_868;pid=884604;prot=eq;tid=916117 - scaffold_8 Yes
AL8G23200 aly name=scaffold_802320.1;pid=918920;prot=eq;tid=950433 - scaffold_8 Yes
AT1G43910 ath P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G05380.1); Has 21538 Blast hits to 20075 proteins in 2875 species: Archae - 1244; Bacteria - 8173; Metazoa - 2975; Fungi - 2572; Plants - 2413; Viruses - 32; Other Eukaryotes - 4129 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; - 1 No
AT2G04620 ath Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Cation efflux family protein transcript=eq;prot=eq; - 2 Yes
AT2G18190 ath P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, egg cell, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18193.1); Has 21090 Blast hits to 19452 proteins in 2829 species: Archae - 1310; Bacteria - 7333; Metazoa - 3029; Fungi - 2708; Plants - 2432; Viruses - 36; Other Eukaryotes - 4242 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; - 2 No
AT2G18193 ath P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18190.1); Has 23461 Blast hits to 21735 proteins in 2869 species: Archae - 1360; Bacteria - 7764; Metazoa - 3767; Fungi - 3122; Plants - 2740; Viruses - 37; Other Eukaryotes - 4671 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; - 2 No
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