Gene family  

Sub-families
ORTHO000409 (61 genes in 15 species)
ORTHO001514 (37 genes in 21 species)
ORTHO002321 (33 genes in 18 species)
View all sub-families (54)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (16 genes)
ath
Arabidopsis thaliana (22 genes)
bdi
Brachypodium distachyon (23 genes)
cpa
Carica papaya (26 genes)
cre
Chlamydomonas reinhardtii (19 genes)
fve
Fragaria vesca (29 genes)
gma
Glycine max (37 genes)
lja
Lotus japonicus (33 genes)
mdo
Malus domestica (35 genes)
mes
Manihot esculenta (31 genes)
mrcc299
Micromonas sp. RCC299 (17 genes)
mtr
Medicago truncatula (33 genes)
olu
Ostreococcus lucimarinus (20 genes)
osa
Oryza sativa ssp. japonica (29 genes)
osaindica
Oryza sativa ssp. indica (34 genes)
ota
Ostreococcus tauri (15 genes)
ppa
Physcomitrella patens (16 genes)
ptr
Populus trichocarpa (38 genes)
rco
Ricinus communis (20 genes)
sbi
Sorghum bicolor (44 genes)
smo
Selaginella moellendorffii (14 genes)
tca
Theobroma cacao (23 genes)
vca
Volvox carteri (13 genes)
vvi
Vitis vinifera (22 genes)
zma
Zea mays (34 genes)



The gene family HOM000104 has 643 genes in 25 species (79 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 33, showing 20 records out of 643 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G00650 aly name=fgenesh2_kg.1__67__AT1G01630.1;pid=470113;prot=eq;tid=470113 - scaffold_1 No
AL1G17670 aly name=fgenesh1_pm.C_scaffold_1001433;pid=312653;prot=eq;tid=312653 - scaffold_1 No
AL1G20450 aly name=Al_scaffold_0001_2020;pid=880253;prot=eq;tid=911766 + scaffold_1 No
AL1G23710 aly name=scaffold_102513.1;pid=889719;prot=eq;tid=921232 - scaffold_1 No
AL2G12440 aly name=Al_scaffold_0002_1121;pid=876527;prot=eq;tid=908040 - scaffold_2 No
AL2G24040 aly name=scaffold_202459.1;pid=895385;prot=eq;tid=926898 + scaffold_2 No
AL5G12550 aly name=scaffold_501293.1;pid=905589;prot=eq;tid=937102 - scaffold_5 Yes
AL6G30940 aly name=fgenesh1_pg.C_scaffold_6002570;pid=351977;prot=eq;tid=351977 - scaffold_6 No
AL6G36000 aly name=Al_scaffold_0006_3485;pid=863976;prot=eq;tid=895489 + scaffold_6 No
AL7G04170 aly name=fgenesh2_kg.7__406__AT4G36640.1;pid=490973;prot=eq;tid=490973 + scaffold_7 No
AL7G33010 aly name=fgenesh2_kg.7__3078__AT5G35970.1;pid=493645;prot=eq;tid=493645 - scaffold_7 No
AL7G33950 aly name=fgenesh2_kg.7__3125__AT5G37160.1;pid=493692;prot=eq;tid=493692 - scaffold_7 No
AL7G33960 aly name=fgenesh1_pg.C_scaffold_7002829;pid=355656;prot=eq;tid=355656 - scaffold_7 No
AL7G34000 aly name=Al_scaffold_0007_3290;pid=859791;prot=eq;tid=891304 - scaffold_7 No
AL7G34040 aly name=scaffold_703575.1;pid=915833;prot=eq;tid=947346 + scaffold_7 No
AL8G01130 aly name=fgenesh2_kg.8__95__AT5G47010.1;pid=494279;prot=eq;tid=494279 - scaffold_8 No
AT1G01630 ath Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G14820.3); Has 3015 Blast hits to 3010 proteins in 234 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 666; Plants - 866; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).;Sec14p-like phosphatidylinositol transfer family protein transcript=eq;prot=eq; + 1 No
AT1G05460 ath Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.;P-loop containing nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; - 1 No
AT1G14820 ath Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G01630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Sec14p-like phosphatidylinositol transfer family protein transcript=eq;prot=eq; - 1 No
AT1G16800 ath P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1); Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197; Bacteria - 2032; Metazoa - 2727; Fungi - 1277; Plants - 815; Viruses - 364; Other Eukaryotes - 2359 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily protein transcript=eq;prot=eq; - 1 No
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