Gene family  

Sub-families
ORTHO001081 (42 genes in 22 species)
ORTHO002999 (30 genes in 17 species)
ORTHO009380 (20 genes in 16 species)
View all sub-families (136)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (80 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (12 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (131 genes)
osaindica
Oryza sativa ssp. indica (163 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (135 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (40 genes)



The gene family HOM000100 has 670 genes in 24 species (40 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 34, showing 20 records out of 670 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G11290 aly name=scaffold_91900001.1;pid=921072;prot=eq;tid=952585 - scaffold_919 No
AL3G03200 aly name=scaffold_300359.1;pid=896389;prot=eq;tid=927902 - scaffold_3 No
AL3G06240 aly name=scaffold_300699.1;pid=896729;prot=eq;tid=928242 - scaffold_3 No
AL4G26280 aly name=scaffold_402729.1;pid=903228;prot=eq;tid=934741 + scaffold_4 No
AL5G11190 aly name=scaffold_501153.1;pid=905449;prot=eq;tid=936962 + scaffold_5 No
AL6G19130 aly name=fgenesh2_kg.6__1918__AT5G19000.1;pid=488784;prot=eq;tid=488784 + scaffold_6 No
AL6G21290 aly name=scaffold_602199.1;pid=910142;prot=eq;tid=941655 + scaffold_6 No
AL6G30720 aly name=fgenesh2_kg.6__2886__AT4G08455.1;pid=489752;prot=eq;tid=489752 + scaffold_6 No
AT2G39760 ath BPM3; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 6744 Blast hits to 6554 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 4817; Fungi - 136; Plants - 1477; Viruses - 34; Other Eukaryotes - 280 (source: NCBI BLink).;BTB/POZ/MATH-domains containing protein transcript=eq;prot=eq; + 2 No
AT3G03740 ath BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink).;BTB-POZ and MATH domain 4 transcript=eq;prot=eq; - 3 No
AT3G06190 ath BTB-POZ and MATH domain 2 (BPM2); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 1 (TAIR:AT5G19000.1); Has 5905 Blast hits to 5761 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 4114; Fungi - 49; Plants - 1477; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).;BTB-POZ and MATH domain 2 transcript=eq;prot=eq; - 3 No
AT3G43700 ath BTB-POZ and MATH domain 6 (BPM6); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 7239 Blast hits to 7013 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 5298; Fungi - 161; Plants - 1386; Viruses - 66; Other Eukaryotes - 328 (source: NCBI BLink).;BTB-POZ and MATH domain 6 transcript=eq;prot=eq; + 3 No
AT4G08455 ath BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT1G01640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;BTB/POZ domain-containing protein transcript=eq;prot=eq; + 4 No
AT5G19000 ath BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), BTB/POZ (InterPro:IPR013069), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1).;BTB-POZ and MATH domain 1 transcript=eq;prot=eq; + 5 No
AT5G21010 ath BTB-POZ and MATH domain 5 (BPM5); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 6 (TAIR:AT3G43700.1); Has 6893 Blast hits to 6668 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4820; Fungi - 220; Plants - 1514; Viruses - 55; Other Eukaryotes - 284 (source: NCBI BLink).;BTB-POZ and MATH domain 5 transcript=eq;prot=eq; + 5 No
BD1G03520 bdi pid=Bradi1g03520.1;tid=Bradi1g03520.1;GeneName=Bradi1g03520;transcript=eq;prot=eq - Bd1 No
BD1G05397 bdi pid=Bradi1g05397.1;tid=Bradi1g05397.1;GeneName=Bradi1g05397;transcript=eq;prot=eq + Bd1 No
BD1G06070 bdi BTB pid=Bradi1g06070.1;tid=Bradi1g06070.1;GeneName=Bradi1g06070;transcript=eq;prot=eq - Bd1 No
BD1G19390 bdi BTB pid=Bradi1g19390.1;tid=Bradi1g19390.1;GeneName=Bradi1g19390;transcript=eq;prot=eq - Bd1 No
BD1G30767 bdi pid=Bradi1g30767.1;tid=Bradi1g30767.1;GeneName=Bradi1g30767;transcript=eq;prot=eq - Bd1 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier