Gene family  

Sub-families
ORTHO001205 (41 genes in 1 species)
ORTHO005634 (25 genes in 18 species)
ORTHO007537 (23 genes in 11 species)
View all sub-families (67)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (26 genes)
cpa
Carica papaya (10 genes)
fve
Fragaria vesca (100 genes)
gma
Glycine max (17 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (78 genes)
mes
Manihot esculenta (46 genes)
mtr
Medicago truncatula (13 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (44 genes)
osaindica
Oryza sativa ssp. indica (214 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (24 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (135 genes)
tca
Theobroma cacao (10 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (7 genes)



The gene family HOM000095 has 743 genes in 20 species (205 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 38, showing 20 records out of 743 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05710 aly name=scaffold_100611.1;pid=887817;prot=eq;tid=919330 + scaffold_1 No
AL2G00690 aly name=fgenesh2_kg.2__55__AT1G64270.1;pid=474925;prot=eq;tid=474925 - scaffold_2 Yes
AL2G24220 aly name=fgenesh2_kg.2__1809__AT1G75340.1;pid=476679;prot=eq;tid=476679 - scaffold_2 Yes
AT1G49920 ath MuDR family transposase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: MuDR family transposase (TAIR:AT1G64260.1); Has 26408 Blast hits to 9010 proteins in 522 species: Archae - 72; Bacteria - 1697; Metazoa - 8826; Fungi - 3151; Plants - 2780; Viruses - 610; Other Eukaryotes - 9272 (source: NCBI BLink).;MuDR family transposase transcript=eq;prot=eq; - 1 No
AT1G64255 ath MuDR family transposase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, SWIM-type (InterPro:IPR007527), Zinc finger, PMZ-type (InterPro:IPR006564), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: MuDR family transposase (TAIR:AT1G64260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;MuDR family transposase transcript=eq;prot=eq; + 1 No
AT1G64260 ath MuDR family transposase; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527), Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: MuDR family transposase (TAIR:AT1G64255.1); Has 1329 Blast hits to 1275 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1325; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;MuDR family transposase transcript=eq;prot=eq; + 1 No
AT1G75340 ath Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 7050 Blast hits to 2615 proteins in 330 species: Archae - 4; Bacteria - 260; Metazoa - 1495; Fungi - 1019; Plants - 181; Viruses - 41; Other Eukaryotes - 4050 (source: NCBI BLink).;Zinc finger C-x8-C-x5-C-x3-H type family protein transcript=eq;prot=eq; - 1 Yes
BD1G19580 bdi pid=Bradi1g19580.1;tid=Bradi1g19580.1;GeneName=Bradi1g19580;transcript=eq;prot=eq - Bd1 No
BD1G19600 bdi pid=Bradi1g19600.1;tid=Bradi1g19600.1;GeneName=Bradi1g19600;transcript=eq;prot=eq - Bd1 No
BD1G21975 bdi pid=Bradi1g21975.1;tid=Bradi1g21975.1;GeneName=Bradi1g21975;transcript=eq;prot=eq - Bd1 No
BD1G23870 bdi zinc ion binding (Blast2GO) pid=Bradi1g23870.1;tid=Bradi1g23870.1;GeneName=Bradi1g23870;transcript=eq;prot=eq + Bd1 No
BD1G34507 bdi pid=Bradi1g34507.2;tid=Bradi1g34507.2;GeneName=Bradi1g34507;transcript=eq;prot=eq + Bd1 Yes
BD1G35585 bdi pid=Bradi1g35585.1;tid=Bradi1g35585.1;GeneName=Bradi1g35585;transcript=eq;prot=eq + Bd1 No
BD1G37060 bdi pid=Bradi1g37060.1;tid=Bradi1g37060.1;GeneName=Bradi1g37060;transcript=eq;prot=eq - Bd1 Yes
BD1G37775 bdi pid=Bradi1g37775.1;tid=Bradi1g37775.1;GeneName=Bradi1g37775;transcript=eq;prot=eq + Bd1 Yes
BD1G42910 bdi pid=Bradi1g42910.1;tid=Bradi1g42910.1;GeneName=Bradi1g42910;transcript=eq;prot=eq + Bd1 No
BD1G67967 bdi pid=Bradi1g67967.1;tid=Bradi1g67967.1;GeneName=Bradi1g67967;transcript=eq;prot=eq - Bd1 No
BD1G73050 bdi pid=Bradi1g73050.1;tid=Bradi1g73050.1;GeneName=Bradi1g73050;transcript=eq;prot=eq + Bd1 Yes
BD2G02790 bdi zinc ion binding (Blast2GO) pid=Bradi2g02790.1;tid=Bradi2g02790.1;GeneName=Bradi2g02790;transcript=eq;prot=eq + Bd2 No
BD2G03540 bdi zinc ion binding (Blast2GO) pid=Bradi2g03540.1;tid=Bradi2g03540.1;GeneName=Bradi2g03540;transcript=eq;prot=eq - Bd2 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier