Gene family  

Sub-families
ORTHO000080 (132 genes in 18 species)
ORTHO000651 (51 genes in 14 species)
ORTHO001672 (36 genes in 18 species)
View all sub-families (62)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (17 genes)
ath
Arabidopsis thaliana (21 genes)
bdi
Brachypodium distachyon (42 genes)
cpa
Carica papaya (22 genes)
cre
Chlamydomonas reinhardtii (13 genes)
fve
Fragaria vesca (54 genes)
gma
Glycine max (54 genes)
lja
Lotus japonicus (22 genes)
mdo
Malus domestica (81 genes)
mes
Manihot esculenta (54 genes)
mrcc299
Micromonas sp. RCC299 (6 genes)
mtr
Medicago truncatula (23 genes)
olu
Ostreococcus lucimarinus (7 genes)
osa
Oryza sativa ssp. japonica (48 genes)
osaindica
Oryza sativa ssp. indica (58 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (59 genes)
rco
Ricinus communis (26 genes)
sbi
Sorghum bicolor (50 genes)
smo
Selaginella moellendorffii (38 genes)
tca
Theobroma cacao (38 genes)
vca
Volvox carteri (6 genes)
vvi
Vitis vinifera (54 genes)
zma
Zea mays (42 genes)



The gene family HOM000078 has 846 genes in 25 species (55 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 43, showing 20 records out of 846 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G10970 aly name=scaffold_85500001.1;pid=921020;prot=eq;tid=952533 - scaffold_855 No
AL1G17920 aly name=fgenesh2_kg.1__1858__AT1G17060.1;pid=471904;prot=eq;tid=471904 - scaffold_1 No
AL1G32980 aly name=fgenesh2_kg.1__3320__AT1G31800.1;pid=473366;prot=eq;tid=473366 + scaffold_1 No
AL2G14940 aly name=fgenesh2_kg.2__938__AT1G67110.1;pid=475808;prot=eq;tid=475808 - scaffold_2 No
AL2G23990 aly name=fgenesh2_kg.2__1782__AT1G75130.1;pid=476652;prot=eq;tid=476652 - scaffold_2 No
AL3G15450 aly name=fgenesh2_kg.3__1581__AT3G14610.1;pid=478880;prot=eq;tid=478880 + scaffold_3 No
AL3G15460 aly name=scaffold_301702.1;pid=897732;prot=eq;tid=929245 - scaffold_3 No
AL3G15470 aly name=fgenesh2_kg.3__1583__AT3G14660.1;pid=478882;prot=eq;tid=478882 + scaffold_3 No
AL4G09550 aly name=scaffold_400958.1;pid=901457;prot=eq;tid=932970 + scaffold_4 No
AL4G35120 aly name=Al_scaffold_0004_3399;pid=871236;prot=eq;tid=902749 - scaffold_4 No
AL4G35130 aly name=fgenesh1_pg.C_scaffold_4002847;pid=346505;prot=eq;tid=346505 - scaffold_4 No
AL4G35140 aly name=scaffold_403669.1;pid=904168;prot=eq;tid=935681 - scaffold_4 No
AL7G14170 aly name=fgenesh1_pm.C_scaffold_7001148;pid=328921;prot=eq;tid=328921 - scaffold_7 No
AL7G28770 aly name=fgenesh2_kg.7__2810__AT4G15110.1;pid=493377;prot=eq;tid=493377 + scaffold_7 No
AL7G39030 aly name=fgenesh2_kg.7__3483__AT1G17060.1;pid=494050;prot=eq;tid=494050 - scaffold_7 No
AL7G40090 aly name=fgenesh2_kg.7__3565__AT5G38450.1;pid=494132;prot=eq;tid=494132 + scaffold_7 No
AL8G16730 aly name=fgenesh1_pm.C_scaffold_8000951;pid=331608;prot=eq;tid=331608 + scaffold_8 No
AT1G17060 ath Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls.;cytochrome p450 72c1 transcript=eq;prot=eq; - 1 No
AT1G31800 ath Encodes a protein with β-ring carotenoid hydroxylase activity.;cytochrome P450, family 97, subfamily A, polypeptide 3 transcript=eq;prot=eq; + 1 No
AT1G67110 ath member of CYP709A;cytochrome P450, family 735, subfamily A, polypeptide 2 transcript=eq;prot=eq; - 1 No
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