Gene family  

Sub-families
ORTHO000059 (148 genes in 11 species)
ORTHO004183 (28 genes in 1 species)
ORTHO007547 (23 genes in 3 species)
View all sub-families (100)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (14 genes)
fve
Fragaria vesca (24 genes)
gma
Glycine max (73 genes)
lja
Lotus japonicus (17 genes)
mdo
Malus domestica (49 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (372 genes)
osa
Oryza sativa ssp. japonica (20 genes)
osaindica
Oryza sativa ssp. indica (125 genes)
ppa
Physcomitrella patens (39 genes)
ptr
Populus trichocarpa (25 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (177 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (16 genes)
zma
Zea mays (8 genes)



The gene family HOM000060 has 973 genes in 18 species (142 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 49, showing 20 records out of 973 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G04010 aly name=fgenesh1_pg.C_scaffold_2000303;pid=338204;prot=eq;tid=338204 + scaffold_2 No
AL4G07610 aly name=Al_scaffold_0004_728;pid=868565;prot=eq;tid=900078 + scaffold_4 No
AT3G30730 ath unknown protein; Has 59 Blast hits to 59 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 Yes
AT3G51690 ath DNA helicase homolog PIF1.;PIF1 helicase transcript=eq;prot=eq; - 3 No
AT3G51700 ath PIF1 helicase; CONTAINS InterPro DOMAIN/s: DNA helicase PIF1, ATP-dependent (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: PIF1 helicase (TAIR:AT3G51690.1); Has 1335 Blast hits to 1330 proteins in 296 species: Archae - 2; Bacteria - 310; Metazoa - 217; Fungi - 167; Plants - 426; Viruses - 5; Other Eukaryotes - 208 (source: NCBI BLink).;PIF1 helicase transcript=eq;prot=eq; - 3 No
AT5G28780 ath PIF1 helicase; CONTAINS InterPro DOMAIN/s: DNA helicase PIF1, ATP-dependent (InterPro:IPR010285); BEST Arabidopsis thaliana protein match is: PIF1 helicase (TAIR:AT3G51690.1); Has 1364 Blast hits to 1355 proteins in 303 species: Archae - 2; Bacteria - 367; Metazoa - 234; Fungi - 111; Plants - 389; Viruses - 9; Other Eukaryotes - 252 (source: NCBI BLink).;PIF1 helicase transcript=eq;prot=eq; - 5 No
BD1G19327 bdi pid=Bradi1g19327.1;tid=Bradi1g19327.1;GeneName=Bradi1g19327;transcript=eq;prot=eq + Bd1 No
BD1G22400 bdi ATP-dependent DNA helicase activity (Blast2GO) pid=Bradi1g22400.1;tid=Bradi1g22400.1;GeneName=Bradi1g22400;transcript=eq;prot=eq + Bd1 No
BD1G41650 bdi pid=Bradi1g41650.1;tid=Bradi1g41650.1;GeneName=Bradi1g41650;transcript=eq;prot=eq - Bd1 Yes
BD1G56107 bdi pid=Bradi1g56107.1;tid=Bradi1g56107.1;GeneName=Bradi1g56107;transcript=eq;prot=eq + Bd1 No
BD1G57975 bdi pid=Bradi1g57975.1;tid=Bradi1g57975.1;GeneName=Bradi1g57975;transcript=eq;prot=eq - Bd1 No
BD1G59317 bdi pid=Bradi1g59317.1;tid=Bradi1g59317.1;GeneName=Bradi1g59317;transcript=eq;prot=eq + Bd1 No
BD2G17130 bdi ATP-dependent DNA helicase activity (Blast2GO) pid=Bradi2g17130.1;tid=Bradi2g17130.1;GeneName=Bradi2g17130;transcript=eq;prot=eq - Bd2 No
BD2G24255 bdi pid=Bradi2g24255.1;tid=Bradi2g24255.1;GeneName=Bradi2g24255;transcript=eq;prot=eq + Bd2 No
BD3G26413 bdi pid=Bradi3g26413.1;tid=Bradi3g26413.1;GeneName=Bradi3g26413;transcript=eq;prot=eq + Bd3 No
BD3G26416 bdi pid=Bradi3g26416.1;tid=Bradi3g26416.1;GeneName=Bradi3g26416;transcript=eq;prot=eq + Bd3 No
BD4G17070 bdi pid=Bradi4g17070.1;tid=Bradi4g17070.1;GeneName=Bradi4g17070;transcript=eq;prot=eq - Bd4 Yes
BD4G17190 bdi ATP-dependent DNA helicase activity (Blast2GO) pid=Bradi4g17190.1;tid=Bradi4g17190.1;GeneName=Bradi4g17190;transcript=eq;prot=eq - Bd4 No
BD5G20075 bdi pid=Bradi5g20075.1;tid=Bradi5g20075.1;GeneName=Bradi5g20075;transcript=eq;prot=eq - Bd5 No
BD5G20077 bdi pid=Bradi5g20077.1;tid=Bradi5g20077.1;GeneName=Bradi5g20077;transcript=eq;prot=eq - Bd5 No
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