Gene family  

Sub-families
ORTHO000114 (105 genes in 9 species)
ORTHO000905 (45 genes in 2 species)
ORTHO002861 (31 genes in 14 species)
View all sub-families (101)
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (31 genes)
cpa
Carica papaya (15 genes)
fve
Fragaria vesca (44 genes)
gma
Glycine max (40 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (28 genes)
mes
Manihot esculenta (29 genes)
mtr
Medicago truncatula (21 genes)
osa
Oryza sativa ssp. japonica (72 genes)
osaindica
Oryza sativa ssp. indica (348 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (25 genes)
rco
Ricinus communis (26 genes)
sbi
Sorghum bicolor (37 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (282 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM000056 has 1021 genes in 20 species (248 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 52, showing 20 records out of 1021 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT4G13320 ath unknown protein; Has 68 Blast hits to 67 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 4 Yes
ATMG00860 ath hypothetical protein;DNA/RNA polymerases superfamily protein transcript=eq;prot=eq; + mitochondrial No
BD1G05810 bdi F-Box pid=Bradi1g05810.1;tid=Bradi1g05810.1;GeneName=Bradi1g05810;transcript=eq;prot=eq + Bd1 Yes
BD1G05960 bdi F-Box pid=Bradi1g05960.1;tid=Bradi1g05960.1;GeneName=Bradi1g05960;transcript=eq;prot=eq - Bd1 Yes
BD1G20313 bdi pid=Bradi1g20313.4;tid=Bradi1g20313.4;GeneName=Bradi1g20313;transcript=eq;prot=eq - Bd1 Yes
BD1G29940 bdi RNA-directed DNA polymerase activity (Blast2GO) pid=Bradi1g29940.1;tid=Bradi1g29940.1;GeneName=Bradi1g29940;transcript=eq;prot=eq - Bd1 No
BD1G37440 bdi pid=Bradi1g37440.1;tid=Bradi1g37440.1;GeneName=Bradi1g37440;transcript=eq;prot=eq + Bd1 No
BD1G54640 bdi RNA-directed DNA polymerase activity, aspartic-type endopeptidase activity (Blast2GO) pid=Bradi1g54640.1;tid=Bradi1g54640.1;GeneName=Bradi1g54640;transcript=eq;prot=eq + Bd1 No
BD1G58730 bdi pid=Bradi1g58730.1;tid=Bradi1g58730.1;GeneName=Bradi1g58730;transcript=eq;prot=eq - Bd1 No
BD1G64840 bdi pid=Bradi1g64840.1;tid=Bradi1g64840.1;GeneName=Bradi1g64840;transcript=eq;prot=eq + Bd1 No
BD2G22980 bdi pid=Bradi2g22980.1;tid=Bradi2g22980.1;GeneName=Bradi2g22980;transcript=eq;prot=eq - Bd2 No
BD2G30447 bdi pid=Bradi2g30447.2;tid=Bradi2g30447.2;GeneName=Bradi2g30447;transcript=eq;prot=eq + Bd2 No
BD2G31575 bdi pid=Bradi2g31575.1;tid=Bradi2g31575.1;GeneName=Bradi2g31575;transcript=eq;prot=eq - Bd2 No
BD2G31805 bdi pid=Bradi2g31805.1;tid=Bradi2g31805.1;GeneName=Bradi2g31805;transcript=eq;prot=eq - Bd2 No
BD2G35425 bdi pid=Bradi2g35425.1;tid=Bradi2g35425.1;GeneName=Bradi2g35425;transcript=eq;prot=eq - Bd2 No
BD2G36140 bdi pid=Bradi2g36140.1;tid=Bradi2g36140.1;GeneName=Bradi2g36140;transcript=eq;prot=eq - Bd2 No
BD2G40377 bdi pid=Bradi2g40377.1;tid=Bradi2g40377.1;GeneName=Bradi2g40377;transcript=eq;prot=eq + Bd2 No
BD3G00450 bdi pid=Bradi3g00450.1;tid=Bradi3g00450.1;GeneName=Bradi3g00450;transcript=eq;prot=eq - Bd3 Yes
BD3G00460 bdi pid=Bradi3g00460.1;tid=Bradi3g00460.1;GeneName=Bradi3g00460;transcript=eq;prot=eq + Bd3 Yes
BD3G21273 bdi pid=Bradi3g21273.1;tid=Bradi3g21273.1;GeneName=Bradi3g21273;transcript=eq;prot=eq - Bd3 No
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