Gene family  

Sub-families
ORTHO000069 (138 genes in 10 species)
ORTHO000621 (52 genes in 5 species)
ORTHO012343 (16 genes in 1 species)
View all sub-families (70)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (60 genes)
cpa
Carica papaya (23 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (91 genes)
gma
Glycine max (44 genes)
lja
Lotus japonicus (12 genes)
mdo
Malus domestica (17 genes)
mes
Manihot esculenta (10 genes)
mtr
Medicago truncatula (99 genes)
osa
Oryza sativa ssp. japonica (13 genes)
osaindica
Oryza sativa ssp. indica (412 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (20 genes)
ptr
Populus trichocarpa (25 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (75 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (111 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (1 gene)



The gene family HOM000053 has 1046 genes in 23 species (307 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 53, showing 20 records out of 1046 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G08490 aly name=scaffold_800881.1;pid=917481;prot=eq;tid=948994 + scaffold_8 No
AT1G48720 ath unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 Yes
AT3G20980 ath Gag-Pol-related retrotransposon family protein; BEST Arabidopsis thaliana protein match is: Gag-Pol-related retrotransposon family protein (TAIR:AT3G21000.1); Has 688 Blast hits to 571 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 27; Plants - 650; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Gag-Pol-related retrotransposon family protein transcript=eq;prot=eq; + 3 Yes
ATMG00240 ath hypothetical protein;Gag-Pol-related retrotransposon family protein transcript=eq;prot=eq; - mitochondrial No
ATMG00300 ath hypothetical protein;Gag-Pol-related retrotransposon family protein transcript=eq;prot=eq; - mitochondrial Yes
ATMG00710 ath hypothetical protein;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - mitochondrial No
ATMG00810 ath hypothetical protein;DNA/RNA polymerases superfamily protein transcript=eq;prot=eq; - mitochondrial No
ATMG00820 ath hypothetical protein;Reverse transcriptase (RNA-dependent DNA polymerase) transcript=eq;prot=eq; - mitochondrial No
BD0G00070 bdi pid=Bradi0007s00200.2;tid=Bradi0007s00200.2;GeneName=Bradi0007s00200;transcript=eq;prot=eq + scaffold_7 No
BD1G06850 bdi pid=Bradi1g06850.1;tid=Bradi1g06850.1;GeneName=Bradi1g06850;transcript=eq;prot=eq - Bd1 No
BD1G24480 bdi pid=Bradi1g24480.1;tid=Bradi1g24480.1;GeneName=Bradi1g24480;transcript=eq;prot=eq + Bd1 No
BD1G31490 bdi pid=Bradi1g31490.1;tid=Bradi1g31490.1;GeneName=Bradi1g31490;transcript=eq;prot=eq - Bd1 No
BD1G35855 bdi pid=Bradi1g35855.1;tid=Bradi1g35855.1;GeneName=Bradi1g35855;transcript=eq;prot=eq - Bd1 Yes
BD1G43020 bdi zinc ion binding (Blast2GO) pid=Bradi1g43020.1;tid=Bradi1g43020.1;GeneName=Bradi1g43020;transcript=eq;prot=eq + Bd1 No
BD1G43550 bdi zinc ion binding (Blast2GO) pid=Bradi1g43550.1;tid=Bradi1g43550.1;GeneName=Bradi1g43550;transcript=eq;prot=eq - Bd1 No
BD1G47205 bdi pid=Bradi1g47205.1;tid=Bradi1g47205.1;GeneName=Bradi1g47205;transcript=eq;prot=eq + Bd1 No
BD1G51145 bdi pid=Bradi1g51145.1;tid=Bradi1g51145.1;GeneName=Bradi1g51145;transcript=eq;prot=eq - Bd1 No
BD1G52995 bdi pid=Bradi1g52995.1;tid=Bradi1g52995.1;GeneName=Bradi1g52995;transcript=eq;prot=eq + Bd1 No
BD1G57220 bdi pid=Bradi1g57220.1;tid=Bradi1g57220.1;GeneName=Bradi1g57220;transcript=eq;prot=eq + Bd1 No
BD1G58725 bdi pid=Bradi1g58725.1;tid=Bradi1g58725.1;GeneName=Bradi1g58725;transcript=eq;prot=eq + Bd1 No
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