Gene family  

Sub-families
ORTHO000319 (69 genes in 4 species)
ORTHO002584 (32 genes in 1 species)
ORTHO006151 (25 genes in 3 species)
View all sub-families (137)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (18 genes)
fve
Fragaria vesca (231 genes)
gma
Glycine max (112 genes)
lja
Lotus japonicus (111 genes)
mdo
Malus domestica (117 genes)
mes
Manihot esculenta (50 genes)
mtr
Medicago truncatula (310 genes)
osa
Oryza sativa ssp. japonica (1 gene)
ptr
Populus trichocarpa (60 genes)
rco
Ricinus communis (37 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (61 genes)
vvi
Vitis vinifera (10 genes)



The gene family HOM000048 has 1140 genes in 16 species (145 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 57, showing 20 records out of 1140 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G09770 aly name=fgenesh1_pm.C_scaffold_649000001;pid=333369;prot=eq;tid=333369 - scaffold_649 No
AL0G09790 aly name=fgenesh1_pm.C_scaffold_649000002;pid=333370;prot=eq;tid=333370 - scaffold_649 No
AL3G06290 aly name=fgenesh2_kg.3__625__AT3G06240.1;pid=477924;prot=eq;tid=477924 + scaffold_3 No
AL3G06300 aly name=scaffold_300705.1;pid=896735;prot=eq;tid=928248 + scaffold_3 No
AL3G08320 aly name=fgenesh2_kg.3__826__AT3G07870.1;pid=478125;prot=eq;tid=478125 + scaffold_3 No
AL3G17230 aly name=scaffold_301894.1;pid=897924;prot=eq;tid=929437 - scaffold_3 No
AL3G26820 aly name=fgenesh2_kg.3__2599__AT3G23880.1;pid=479898;prot=eq;tid=479898 - scaffold_3 No
AL4G28490 aly name=scaffold_402965.1;pid=903464;prot=eq;tid=934977 - scaffold_4 No
AL6G35820 aly name=fgenesh2_kg.6__3191__AT4G12560.2;pid=490057;prot=eq;tid=490057 + scaffold_6 No
AL7G19840 aly name=fgenesh1_pm.C_scaffold_7001605;pid=329378;prot=eq;tid=329378 + scaffold_7 No
AL7G19870 aly name=fgenesh1_pm.C_scaffold_7001607;pid=329380;prot=eq;tid=329380 + scaffold_7 No
AL7G30670 aly name=scaffold_703257.1;pid=915515;prot=eq;tid=947028 - scaffold_7 No
AT2G41473 ath F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein / jacalin lectin family protein (TAIR:AT3G59610.1); Has 802 Blast hits to 799 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 802; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 2 No
AT3G06240 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G12560.2); Has 2015 Blast hits to 1993 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 3 No
AT3G07870 ath F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G23880.1); Has 2008 Blast hits to 1989 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2006; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box and associated interaction domains-containing protein transcript=eq;prot=eq; + 3 No
AT3G16210 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G32600.1); Has 2517 Blast hits to 2509 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2515; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; - 3 No
AT3G23880 ath F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G06240.1); Has 2315 Blast hits to 2300 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2313; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box and associated interaction domains-containing protein transcript=eq;prot=eq; - 3 No
AT4G12560 ath Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response.;F-box and associated interaction domains-containing protein transcript=eq;prot=eq; + 4 No
AT4G22390 ath F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G12560.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;F-box associated ubiquitination effector family protein transcript=eq;prot=eq; - 4 No
BD3G29370 bdi F-Box pid=Bradi3g29370.1;tid=Bradi3g29370.1;GeneName=Bradi3g29370;transcript=eq;prot=eq + Bd3 No
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