Gene family 
- Id
- HOM000048
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO000319 (69 genes in 4 species)
ORTHO002584 (32 genes in 1 species)
ORTHO006151 (25 genes in 3 species)
View all sub-families (137)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (12 genes)
- ath
- Arabidopsis thaliana (7 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (18 genes)
- fve
- Fragaria vesca (231 genes)
- gma
- Glycine max (112 genes)
- lja
- Lotus japonicus (111 genes)
- mdo
- Malus domestica (117 genes)
- mes
- Manihot esculenta (50 genes)
- mtr
- Medicago truncatula (310 genes)
- osa
- Oryza sativa ssp. japonica (1 gene)
- ptr
- Populus trichocarpa (60 genes)
- rco
- Ricinus communis (37 genes)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (61 genes)
- vvi
- Vitis vinifera (10 genes)
The gene family HOM000048 has 1140 genes in 16 species (145 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000048
Page 1 of 57, showing 20 records out of 1140 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL0G09770 | aly | name=fgenesh1_pm.C_scaffold_649000001;pid=333369;prot=eq;tid=333369 | - | scaffold_649 | No | |
| AL0G09790 | aly | name=fgenesh1_pm.C_scaffold_649000002;pid=333370;prot=eq;tid=333370 | - | scaffold_649 | No | |
| AL3G06290 | aly | name=fgenesh2_kg.3__625__AT3G06240.1;pid=477924;prot=eq;tid=477924 | + | scaffold_3 | No | |
| AL3G06300 | aly | name=scaffold_300705.1;pid=896735;prot=eq;tid=928248 | + | scaffold_3 | No | |
| AL3G08320 | aly | name=fgenesh2_kg.3__826__AT3G07870.1;pid=478125;prot=eq;tid=478125 | + | scaffold_3 | No | |
| AL3G17230 | aly | name=scaffold_301894.1;pid=897924;prot=eq;tid=929437 | - | scaffold_3 | No | |
| AL3G26820 | aly | name=fgenesh2_kg.3__2599__AT3G23880.1;pid=479898;prot=eq;tid=479898 | - | scaffold_3 | No | |
| AL4G28490 | aly | name=scaffold_402965.1;pid=903464;prot=eq;tid=934977 | - | scaffold_4 | No | |
| AL6G35820 | aly | name=fgenesh2_kg.6__3191__AT4G12560.2;pid=490057;prot=eq;tid=490057 | + | scaffold_6 | No | |
| AL7G19840 | aly | name=fgenesh1_pm.C_scaffold_7001605;pid=329378;prot=eq;tid=329378 | + | scaffold_7 | No | |
| AL7G19870 | aly | name=fgenesh1_pm.C_scaffold_7001607;pid=329380;prot=eq;tid=329380 | + | scaffold_7 | No | |
| AL7G30670 | aly | name=scaffold_703257.1;pid=915515;prot=eq;tid=947028 | - | scaffold_7 | No | |
| AT2G41473 | ath | F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein / jacalin lectin family protein (TAIR:AT3G59610.1); Has 802 Blast hits to 799 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 802; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box family protein | transcript=eq;prot=eq; | - | 2 | No |
| AT3G06240 | ath | F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G12560.2); Has 2015 Blast hits to 1993 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT3G07870 | ath | F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G23880.1); Has 2008 Blast hits to 1989 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2006; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box and associated interaction domains-containing protein | transcript=eq;prot=eq; | + | 3 | No |
| AT3G16210 | ath | F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT1G32600.1); Has 2517 Blast hits to 2509 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2515; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box family protein | transcript=eq;prot=eq; | - | 3 | No |
| AT3G23880 | ath | F-box and associated interaction domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G06240.1); Has 2315 Blast hits to 2300 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2313; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;F-box and associated interaction domains-containing protein | transcript=eq;prot=eq; | - | 3 | No |
| AT4G12560 | ath | Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response.;F-box and associated interaction domains-containing protein | transcript=eq;prot=eq; | + | 4 | No |
| AT4G22390 | ath | F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G12560.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;F-box associated ubiquitination effector family protein | transcript=eq;prot=eq; | - | 4 | No |
| BD3G29370 | bdi | F-Box | pid=Bradi3g29370.1;tid=Bradi3g29370.1;GeneName=Bradi3g29370;transcript=eq;prot=eq | + | Bd3 | No |