Gene family  

Sub-families
ORTHO000473 (57 genes in 23 species)
ORTHO000808 (47 genes in 13 species)
ORTHO002076 (34 genes in 14 species)
View all sub-families (124)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (16 genes)
ath
Arabidopsis thaliana (27 genes)
bdi
Brachypodium distachyon (90 genes)
cpa
Carica papaya (37 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (90 genes)
gma
Glycine max (103 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (132 genes)
mes
Manihot esculenta (28 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (82 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (33 genes)
osaindica
Oryza sativa ssp. indica (181 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (65 genes)
rco
Ricinus communis (30 genes)
sbi
Sorghum bicolor (211 genes)
tca
Theobroma cacao (39 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (37 genes)
zma
Zea mays (22 genes)



The gene family HOM000045 has 1251 genes in 23 species (349 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 63, showing 20 records out of 1251 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G01350 aly name=fgenesh2_kg.9__81__AT4G12850.1;pid=497116;prot=eq;tid=497116 - scaffold_9 No
AL1G10090 aly name=scaffold_101080.1;pid=888286;prot=eq;tid=919799 - scaffold_1 Yes
AL1G19460 aly name=scaffold_102068.1;pid=889274;prot=eq;tid=920787 - scaffold_1 Yes
AL1G51390 aly name=Al_scaffold_0001_5049;pid=883282;prot=eq;tid=914795 - scaffold_1 Yes
AL2G11160 aly name=Al_scaffold_0002_1005;pid=876411;prot=eq;tid=907924 - scaffold_2 No
AL2G22820 aly name=fgenesh2_kg.2__1662__AT1G73940.1;pid=476532;prot=eq;tid=476532 - scaffold_2 Yes
AL2G22980 aly name=fgenesh2_kg.2__1676__AT1G74050.1;pid=476546;prot=eq;tid=476546 - scaffold_2 Yes
AL2G23000 aly name=fgenesh2_kg.2__1678__AT1G74060.1;pid=476548;prot=eq;tid=476548 - scaffold_2 Yes
AL3G07920 aly name=scaffold_300886.1;pid=896916;prot=eq;tid=928429 + scaffold_3 No
AL3G33050 aly name=fgenesh2_kg.3__3001__AT1G42570.1;pid=480300;prot=eq;tid=480300 + scaffold_3 No
AL4G30720 aly name=fgenesh2_kg.4__2495__AT2G43280.1;pid=483435;prot=eq;tid=483435 + scaffold_4 No
AL5G29980 aly name=scaffold_503155.1;pid=907451;prot=eq;tid=938964 - scaffold_5 No
AL6G06960 aly name=fgenesh2_kg.6__682__AT5G07230.1;pid=487548;prot=eq;tid=487548 + scaffold_6 Yes
AL8G13080 aly name=fgenesh1_pg.C_scaffold_8000972;pid=357185;prot=eq;tid=357185 + scaffold_8 Yes
AL8G16490 aly name=scaffold_801659.1;pid=918259;prot=eq;tid=949772 + scaffold_8 Yes
AL8G28370 aly name=fgenesh2_kg.8__2199__AT5G62080.1;pid=496383;prot=eq;tid=496383 - scaffold_8 Yes
AT1G10240 ath FAR1-related sequence 11 (FRS11); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 10 (TAIR:AT5G28530.1); Has 1389 Blast hits to 1253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 83; Plants - 1296; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;FAR1-related sequence 11 transcript=eq;prot=eq; - 1 No
AT1G18540 ath Ribosomal protein L6 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6, N-terminal (InterPro:IPR005568), Ribosomal protein L6E (InterPro:IPR000915); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family protein (TAIR:AT1G74050.1); Has 758 Blast hits to 758 proteins in 286 species: Archae - 33; Bacteria - 0; Metazoa - 332; Fungi - 149; Plants - 117; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).;Ribosomal protein L6 family protein transcript=eq;prot=eq; - 1 Yes
AT1G52520 ath FAR1-related sequence 6 (FRS6); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Zinc finger, PMZ-type (InterPro:IPR006564), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 8 (TAIR:AT1G80010.1); Has 1626 Blast hits to 1478 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 91; Plants - 1518; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;FAR1-related sequence 6 transcript=eq;prot=eq; + 1 No
AT1G73940 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49410.2); Has 54 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 1 Yes
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