Gene family  

Sub-families
ORTHO000261 (75 genes in 6 species)
ORTHO013832 (13 genes in 8 species)
ORTHO015534 (10 genes in 1 species)
View all sub-families (107)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (139 genes)
cpa
Carica papaya (33 genes)
fve
Fragaria vesca (514 genes)
gma
Glycine max (13 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (23 genes)
mes
Manihot esculenta (27 genes)
mtr
Medicago truncatula (18 genes)
osa
Oryza sativa ssp. japonica (72 genes)
osaindica
Oryza sativa ssp. indica (139 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (20 genes)
rco
Ricinus communis (124 genes)
sbi
Sorghum bicolor (169 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
zma
Zea mays (4 genes)



The gene family HOM000038 has 1322 genes in 19 species (286 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 67, showing 20 records out of 1322 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G37770 aly name=Al_scaffold_0001_3717;pid=881950;prot=eq;tid=913463 - scaffold_1 No
AL3G27520 aly name=Al_scaffold_0003_2660;pid=874019;prot=eq;tid=905532 + scaffold_3 Yes
AL5G08300 aly name=Al_scaffold_0005_793;pid=865314;prot=eq;tid=896827 - scaffold_5 No
AL5G15960 aly name=Al_scaffold_0005_1532;pid=866053;prot=eq;tid=897566 + scaffold_5 No
AL7G35390 aly name=Al_scaffold_0007_3419;pid=859920;prot=eq;tid=891433 - scaffold_7 Yes
AL8G08160 aly name=scaffold_800854.1;pid=917454;prot=eq;tid=948967 + scaffold_8 Yes
AL8G27090 aly name=Al_scaffold_0008_2590;pid=886326;prot=eq;tid=917839 - scaffold_8 Yes
AT1G05835 ath PHD finger protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1); Has 93 Blast hits to 91 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;PHD finger protein transcript=eq;prot=eq; + 1 Yes
AT2G34320 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1); Has 752 Blast hits to 752 proteins in 29 species: Archae - 14; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 735; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 2 No
AT3G09510 ath Ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 1469 Blast hits to 1446 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1468; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 3 No
AT4G29090 ath Ribonuclease H-like superfamily protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 2218 Blast hits to 2138 proteins in 33 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 0; Plants - 2203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 4 No
AT5G38920 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 90 Blast hits to 90 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 5 Yes
AT5G42965 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 5 Yes
ATMG00310 ath hypothetical protein;RNA-directed DNA polymerase (reverse transcriptase)-related family protein transcript=eq;prot=eq; - mitochondrial No
BD1G02660 bdi pid=Bradi1g02660.1;tid=Bradi1g02660.1;GeneName=Bradi1g02660;transcript=eq;prot=eq + Bd1 No
BD1G02860 bdi pid=Bradi1g02860.1;tid=Bradi1g02860.1;GeneName=Bradi1g02860;transcript=eq;prot=eq + Bd1 Yes
BD1G04770 bdi pid=Bradi1g04770.1;tid=Bradi1g04770.1;GeneName=Bradi1g04770;transcript=eq;prot=eq + Bd1 No
BD1G04970 bdi pid=Bradi1g04970.1;tid=Bradi1g04970.1;GeneName=Bradi1g04970;transcript=eq;prot=eq + Bd1 No
BD1G11970 bdi pid=Bradi1g11970.1;tid=Bradi1g11970.1;GeneName=Bradi1g11970;transcript=eq;prot=eq - Bd1 No
BD1G15870 bdi pid=Bradi1g15870.1;tid=Bradi1g15870.1;GeneName=Bradi1g15870;transcript=eq;prot=eq + Bd1 No
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