Gene family  

Sub-families
ORTHO000193 (84 genes in 3 species)
ORTHO000287 (72 genes in 2 species)
ORTHO000546 (55 genes in 5 species)
View all sub-families (140)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (65 genes)
cpa
Carica papaya (46 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (70 genes)
gma
Glycine max (32 genes)
lja
Lotus japonicus (24 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (36 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (52 genes)
osaindica
Oryza sativa ssp. indica (435 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (433 genes)
rco
Ricinus communis (25 genes)
sbi
Sorghum bicolor (394 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (24 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (4 genes)



The gene family HOM000026 has 1674 genes in 25 species (382 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 84, showing 20 records out of 1674 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G15770 aly name=fgenesh1_pm.C_scaffold_6001261;pid=326041;prot=eq;tid=326041 + scaffold_6 Yes
AL8G08170 aly name=scaffold_800855.1;pid=917455;prot=eq;tid=948968 + scaffold_8 No
AT1G40390 ath DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G43760.1); Has 796 Blast hits to 793 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 796; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;DNAse I-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G43760 ath DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G40390.1); Has 1816 Blast hits to 1744 proteins in 56 species: Archae - 0; Bacteria - 6; Metazoa - 164; Fungi - 4; Plants - 1633; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).;DNAse I-like superfamily protein transcript=eq;prot=eq; - 1 No
AT5G15920 ath Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.;structural maintenance of chromosomes 5 transcript=eq;prot=eq; + 5 Yes
ATMG01250 ath hypothetical protein;RNA-directed DNA polymerase (reverse transcriptase) transcript=eq;prot=eq; + mitochondrial No
BD1G14280 bdi pid=Bradi1g14280.1;tid=Bradi1g14280.1;GeneName=Bradi1g14280;transcript=eq;prot=eq - Bd1 No
BD1G16050 bdi pid=Bradi1g16050.1;tid=Bradi1g16050.1;GeneName=Bradi1g16050;transcript=eq;prot=eq + Bd1 No
BD1G18590 bdi pid=Bradi1g18590.1;tid=Bradi1g18590.1;GeneName=Bradi1g18590;transcript=eq;prot=eq + Bd1 No
BD1G19040 bdi pid=Bradi1g19040.1;tid=Bradi1g19040.1;GeneName=Bradi1g19040;transcript=eq;prot=eq - Bd1 Yes
BD1G21530 bdi pid=Bradi1g21530.1;tid=Bradi1g21530.1;GeneName=Bradi1g21530;transcript=eq;prot=eq - Bd1 No
BD1G22780 bdi F-Box pid=Bradi1g22780.1;tid=Bradi1g22780.1;GeneName=Bradi1g22780;transcript=eq;prot=eq + Bd1 No
BD1G24525 bdi pid=Bradi1g24525.1;tid=Bradi1g24525.1;GeneName=Bradi1g24525;transcript=eq;prot=eq + Bd1 No
BD1G27480 bdi pid=Bradi1g27480.1;tid=Bradi1g27480.1;GeneName=Bradi1g27480;transcript=eq;prot=eq - Bd1 Yes
BD1G30890 bdi pid=Bradi1g30890.1;tid=Bradi1g30890.1;GeneName=Bradi1g30890;transcript=eq;prot=eq - Bd1 No
BD1G32120 bdi pid=Bradi1g32120.1;tid=Bradi1g32120.1;GeneName=Bradi1g32120;transcript=eq;prot=eq + Bd1 No
BD1G43290 bdi pid=Bradi1g43290.1;tid=Bradi1g43290.1;GeneName=Bradi1g43290;transcript=eq;prot=eq - Bd1 No
BD1G49280 bdi pid=Bradi1g49280.1;tid=Bradi1g49280.1;GeneName=Bradi1g49280;transcript=eq;prot=eq + Bd1 No
BD1G53990 bdi trypsin inhibitor activity (Blast2GO) pid=Bradi1g53990.1;tid=Bradi1g53990.1;GeneName=Bradi1g53990;transcript=eq;prot=eq - Bd1 Yes
BD1G59607 bdi pid=Bradi1g59607.1;tid=Bradi1g59607.1;GeneName=Bradi1g59607;transcript=eq;prot=eq - Bd1 No
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