Gene family  

Sub-families
ORTHO000012 (254 genes in 15 species)
ORTHO000131 (99 genes in 8 species)
ORTHO000136 (97 genes in 8 species)
View all sub-families (258)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (91 genes)
cpa
Carica papaya (30 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (90 genes)
gma
Glycine max (106 genes)
lja
Lotus japonicus (57 genes)
mdo
Malus domestica (500 genes)
mes
Manihot esculenta (132 genes)
mtr
Medicago truncatula (282 genes)
osa
Oryza sativa ssp. japonica (225 genes)
osaindica
Oryza sativa ssp. indica (286 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (184 genes)
rco
Ricinus communis (75 genes)
sbi
Sorghum bicolor (159 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (123 genes)
vvi
Vitis vinifera (172 genes)
zma
Zea mays (59 genes)



The gene family HOM000009 has 2595 genes in 21 species (266 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 130, showing 20 records out of 2595 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G06380 aly name=Al_scaffold_0002_576;pid=875982;prot=eq;tid=907495 + scaffold_2 Yes
AL3G15340 aly name=fgenesh2_kg.3__1571__AT3G14460.1;pid=478870;prot=eq;tid=478870 - scaffold_3 No
AL3G15350 aly name=fgenesh2_kg.3__1572__AT3G14470.1;pid=478871;prot=eq;tid=478871 + scaffold_3 No
AL5G20590 aly name=fgenesh2_kg.5__1440__AT3G50950.1;pid=485448;prot=eq;tid=485448 + scaffold_5 No
AL8G07120 aly name=fgenesh2_kg.8__499__AT5G43210.1;pid=494683;prot=eq;tid=494683 - scaffold_8 Yes
AT3G14460 ath LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT3G14470.1); Has 38623 Blast hits to 22788 proteins in 858 species: Archae - 54; Bacteria - 2838; Metazoa - 8237; Fungi - 658; Plants - 25379; Viruses - 2; Other Eukaryotes - 1455 (source: NCBI BLink).;LRR and NB-ARC domains-containing disease resistance protein transcript=eq;prot=eq; - 3 No
AT3G14470 ath NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: protein binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT3G14460.1); Has 25652 Blast hits to 19792 proteins in 681 species: Archae - 38; Bacteria - 1467; Metazoa - 4997; Fungi - 304; Plants - 18213; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink).;NB-ARC domain-containing disease resistance protein transcript=eq;prot=eq; + 3 No
AT3G50950 ath HOPZ-ACTIVATED RESISTANCE 1 (ZAR1); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43470.2); Has 15477 Blast hits to 13963 proteins in 472 species: Archae - 2; Bacteria - 362; Metazoa - 212; Fungi - 129; Plants - 14652; Viruses - 8; Other Eukaryotes - 112 (source: NCBI BLink).;HOPZ-ACTIVATED RESISTANCE 1 transcript=eq;prot=eq; + 3 No
AT5G43210 ath Excinuclease ABC, C subunit, N-terminal; FUNCTIONS IN: nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Excinuclease ABC, C subunit, N-terminal (InterPro:IPR000305); BEST Arabidopsis thaliana protein match is: Excinuclease ABC, C subunit, N-terminal (TAIR:AT2G30350.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Excinuclease ABC, C subunit, N-terminal transcript=eq;prot=eq; + 5 Yes
BD0G00040 bdi ATP binding (Blast2GO) pid=Bradi0023s00200.2;tid=Bradi0023s00200.2;GeneName=Bradi0023s00200;transcript=eq;prot=eq - scaffold_23 No
BD0G00050 bdi NBS LRR pid=Bradi0023s00210.2;tid=Bradi0023s00210.2;GeneName=Bradi0023s00210;transcript=eq;prot=eq - scaffold_23 No
BD0G00060 bdi NBS LRR pid=Bradi0023s00220.2;tid=Bradi0023s00220.2;GeneName=Bradi0023s00220;transcript=eq;prot=eq - scaffold_23 No
BD0G00110 bdi protein tyrosine/serine/threonine phosphatase activity (Blast2GO) pid=Bradi0014s00200.2;tid=Bradi0014s00200.2;GeneName=Bradi0014s00200;transcript=eq;prot=eq + scaffold_14 No
BD1G00237 bdi pid=Bradi1g00237.1;tid=Bradi1g00237.1;GeneName=Bradi1g00237;transcript=eq;prot=eq + Bd1 No
BD1G00960 bdi NBS LRR pid=Bradi1g00960.1;tid=Bradi1g00960.1;GeneName=Bradi1g00960;transcript=eq;prot=eq - Bd1 No
BD1G15650 bdi NBS LRR pid=Bradi1g15650.1;tid=Bradi1g15650.1;GeneName=Bradi1g15650;transcript=eq;prot=eq - Bd1 No
BD1G27757 bdi pid=Bradi1g27757.1;tid=Bradi1g27757.1;GeneName=Bradi1g27757;transcript=eq;prot=eq + Bd1 No
BD1G27770 bdi NBS LRR pid=Bradi1g27770.1;tid=Bradi1g27770.1;GeneName=Bradi1g27770;transcript=eq;prot=eq - Bd1 No
BD1G29560 bdi NBS LRR pid=Bradi1g29560.1;tid=Bradi1g29560.1;GeneName=Bradi1g29560;transcript=eq;prot=eq + Bd1 No
BD1G29634 bdi pid=Bradi1g29634.1;tid=Bradi1g29634.1;GeneName=Bradi1g29634;transcript=eq;prot=eq - Bd1 No
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