Gene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- ORTHO003491
- Gene count gene family
- 29
- Total coding gene count
- 780,667
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Lotus japonicus | 43,146 | 1 | 5.53% | 3.45% | 0.62 |
| Medicago truncatula | 45,197 | 1 | 5.79% | 3.45% | 0.6 |
| Glycine max | 46,464 | 1 | 5.95% | 3.45% | 0.58 |
| Malus domestica | 63,546 | 2 | 8.14% | 6.9% | 0.85 |
| Fragaria vesca | 34,809 | 2 | 4.46% | 6.9% | 1.55 |
| Manihot esculenta | 30,748 | 2 | 3.94% | 6.9% | 1.75 |
| Ricinus communis | 31,221 | 1 | 4% | 3.45% | 0.86 |
| Populus trichocarpa | 41,476 | 2 | 5.31% | 6.9% | 1.3 |
| Arabidopsis thaliana | 27,416 | 1 | 3.51% | 3.45% | 0.98 |
| Arabidopsis lyrata | 32,670 | 1 | 4.18% | 3.45% | 0.83 |
| Carica papaya | 28,027 | 0 | 3.59% | 0% | 0 |
| Theobroma cacao | 28,882 | 1 | 3.7% | 3.45% | 0.93 |
| Vitis vinifera | 26,504 | 0 | 3.4% | 0% | 0 |
| Oryza sativa ssp. japonica | 42,211 | 2 | 5.41% | 6.9% | 1.28 |
| Oryza sativa ssp. indica | 49,202 | 1 | 6.3% | 3.45% | 0.55 |
| Brachypodium distachyon | 26,632 | 1 | 3.41% | 3.45% | 1.01 |
| Sorghum bicolor | 34,609 | 1 | 4.43% | 3.45% | 0.78 |
| Zea mays | 39,190 | 2 | 5.02% | 6.9% | 1.37 |
| Selaginella moellendorffii | 22,285 | 1 | 2.85% | 3.45% | 1.21 |
| Physcomitrella patens | 28,097 | 3 | 3.6% | 10.34% | 2.87 |
| Ostreococcus lucimarinus | 7,805 | 1 | 1% | 3.45% | 3.45 |
| Ostreococcus tauri | 7,994 | 1 | 1.02% | 3.45% | 3.38 |
| Micromonas sp. RCC299 | 10,204 | 1 | 1.31% | 3.45% | 2.63 |
| Volvox carteri | 15,544 | 0 | 1.99% | 0% | 0 |
| Chlamydomonas reinhardtii | 16,788 | 0 | 2.15% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Galegoids | 2 | 88,343 | 2 | 11.32% | 6.9% | 0.61 |
| Papilionoideae | 3 | 134,807 | 3 | 17.27% | 10.34% | 0.6 |
| Rosaceae | 2 | 98,355 | 4 | 12.6% | 13.79% | 1.09 |
| N2FixingClade | 5 | 233,162 | 7 | 29.87% | 24.14% | 0.81 |
| Euphorbiaceae | 2 | 61,969 | 3 | 7.94% | 10.34% | 1.3 |
| Malpighiales | 3 | 103,445 | 5 | 13.25% | 17.24% | 1.3 |
| Fabids | 8 | 336,607 | 12 | 43.12% | 41.38% | 0.96 |
| Arabidopsis | 2 | 60,086 | 2 | 7.7% | 6.9% | 0.9 |
| Brassicales | 3 | 88,113 | 2 | 11.29% | 6.9% | 0.61 |
| Malvids | 4 | 116,995 | 3 | 14.99% | 10.34% | 0.69 |
| Rosids | 12 | 453,602 | 15 | 58.1% | 51.72% | 0.89 |
| Eudicots | 13 | 480,106 | 15 | 61.5% | 51.72% | 0.84 |
| Oryza | 2 | 91,413 | 3 | 11.71% | 10.34% | 0.88 |
| BEPClade | 3 | 118,045 | 4 | 15.12% | 13.79% | 0.91 |
| PACCMADClade | 2 | 73,799 | 3 | 9.45% | 10.34% | 1.09 |
| Monocots | 5 | 191,844 | 7 | 24.57% | 24.14% | 0.98 |
| Angiosperms | 18 | 671,950 | 22 | 86.07% | 75.86% | 0.88 |
| VascularPlants | 19 | 694,235 | 23 | 88.93% | 79.31% | 0.89 |
| LandPlants | 20 | 722,332 | 26 | 92.53% | 89.66% | 0.97 |
| Ostreococcus | 2 | 15,799 | 2 | 2.02% | 6.9% | 3.42 |
| Mamiellales | 3 | 26,003 | 3 | 3.33% | 10.34% | 3.11 |
| Chlamydomonadales | 2 | 32,332 | 0 | 4.14% | 0% | 0 |
| Chlorophyta | 5 | 58,335 | 3 | 7.47% | 10.34% | 1.38 |
| GreenPlants | 25 | 780,667 | 29 | 100% | 100% | 1 |