Gene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- ORTHO001321
- Gene count gene family
- 39
- Total coding gene count
- 780,667
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Lotus japonicus | 43,146 | 1 | 5.53% | 2.56% | 0.46 |
| Medicago truncatula | 45,197 | 0 | 5.79% | 0% | 0 |
| Glycine max | 46,464 | 2 | 5.95% | 5.13% | 0.86 |
| Malus domestica | 63,546 | 4 | 8.14% | 10.26% | 1.26 |
| Fragaria vesca | 34,809 | 1 | 4.46% | 2.56% | 0.57 |
| Manihot esculenta | 30,748 | 3 | 3.94% | 7.69% | 1.95 |
| Ricinus communis | 31,221 | 2 | 4% | 5.13% | 1.28 |
| Populus trichocarpa | 41,476 | 2 | 5.31% | 5.13% | 0.97 |
| Arabidopsis thaliana | 27,416 | 3 | 3.51% | 7.69% | 2.19 |
| Arabidopsis lyrata | 32,670 | 3 | 4.18% | 7.69% | 1.84 |
| Carica papaya | 28,027 | 1 | 3.59% | 2.56% | 0.71 |
| Theobroma cacao | 28,882 | 1 | 3.7% | 2.56% | 0.69 |
| Vitis vinifera | 26,504 | 2 | 3.4% | 5.13% | 1.51 |
| Oryza sativa ssp. japonica | 42,211 | 2 | 5.41% | 5.13% | 0.95 |
| Oryza sativa ssp. indica | 49,202 | 1 | 6.3% | 2.56% | 0.41 |
| Brachypodium distachyon | 26,632 | 1 | 3.41% | 2.56% | 0.75 |
| Sorghum bicolor | 34,609 | 2 | 4.43% | 5.13% | 1.16 |
| Zea mays | 39,190 | 1 | 5.02% | 2.56% | 0.51 |
| Selaginella moellendorffii | 22,285 | 0 | 2.85% | 0% | 0 |
| Physcomitrella patens | 28,097 | 2 | 3.6% | 5.13% | 1.43 |
| Ostreococcus lucimarinus | 7,805 | 1 | 1% | 2.56% | 2.56 |
| Ostreococcus tauri | 7,994 | 1 | 1.02% | 2.56% | 2.51 |
| Micromonas sp. RCC299 | 10,204 | 1 | 1.31% | 2.56% | 1.95 |
| Volvox carteri | 15,544 | 1 | 1.99% | 2.56% | 1.29 |
| Chlamydomonas reinhardtii | 16,788 | 1 | 2.15% | 2.56% | 1.19 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Galegoids | 2 | 88,343 | 1 | 11.32% | 2.56% | 0.23 |
| Papilionoideae | 3 | 134,807 | 3 | 17.27% | 7.69% | 0.45 |
| Rosaceae | 2 | 98,355 | 5 | 12.6% | 12.82% | 1.02 |
| N2FixingClade | 5 | 233,162 | 8 | 29.87% | 20.51% | 0.69 |
| Euphorbiaceae | 2 | 61,969 | 5 | 7.94% | 12.82% | 1.61 |
| Malpighiales | 3 | 103,445 | 7 | 13.25% | 17.95% | 1.35 |
| Fabids | 8 | 336,607 | 15 | 43.12% | 38.46% | 0.89 |
| Arabidopsis | 2 | 60,086 | 6 | 7.7% | 15.38% | 2 |
| Brassicales | 3 | 88,113 | 7 | 11.29% | 17.95% | 1.59 |
| Malvids | 4 | 116,995 | 8 | 14.99% | 20.51% | 1.37 |
| Rosids | 12 | 453,602 | 23 | 58.1% | 58.97% | 1.01 |
| Eudicots | 13 | 480,106 | 25 | 61.5% | 64.1% | 1.04 |
| Oryza | 2 | 91,413 | 3 | 11.71% | 7.69% | 0.66 |
| BEPClade | 3 | 118,045 | 4 | 15.12% | 10.26% | 0.68 |
| PACCMADClade | 2 | 73,799 | 3 | 9.45% | 7.69% | 0.81 |
| Monocots | 5 | 191,844 | 7 | 24.57% | 17.95% | 0.73 |
| Angiosperms | 18 | 671,950 | 32 | 86.07% | 82.05% | 0.95 |
| VascularPlants | 19 | 694,235 | 32 | 88.93% | 82.05% | 0.92 |
| LandPlants | 20 | 722,332 | 34 | 92.53% | 87.18% | 0.94 |
| Ostreococcus | 2 | 15,799 | 2 | 2.02% | 5.13% | 2.54 |
| Mamiellales | 3 | 26,003 | 3 | 3.33% | 7.69% | 2.31 |
| Chlamydomonadales | 2 | 32,332 | 2 | 4.14% | 5.13% | 1.24 |
| Chlorophyta | 5 | 58,335 | 5 | 7.47% | 12.82% | 1.72 |
| GreenPlants | 25 | 780,667 | 39 | 100% | 100% | 1 |