Gene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM005316
- Gene count gene family
- 27
- Total coding gene count
- 780,667
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Lotus japonicus | 43,146 | 2 | 5.53% | 7.41% | 1.34 |
| Medicago truncatula | 45,197 | 2 | 5.79% | 7.41% | 1.28 |
| Glycine max | 46,464 | 1 | 5.95% | 3.7% | 0.62 |
| Malus domestica | 63,546 | 3 | 8.14% | 11.11% | 1.36 |
| Fragaria vesca | 34,809 | 1 | 4.46% | 3.7% | 0.83 |
| Manihot esculenta | 30,748 | 1 | 3.94% | 3.7% | 0.94 |
| Ricinus communis | 31,221 | 1 | 4% | 3.7% | 0.93 |
| Populus trichocarpa | 41,476 | 1 | 5.31% | 3.7% | 0.7 |
| Arabidopsis thaliana | 27,416 | 1 | 3.51% | 3.7% | 1.05 |
| Arabidopsis lyrata | 32,670 | 1 | 4.18% | 3.7% | 0.89 |
| Carica papaya | 28,027 | 0 | 3.59% | 0% | 0 |
| Theobroma cacao | 28,882 | 1 | 3.7% | 3.7% | 1 |
| Vitis vinifera | 26,504 | 1 | 3.4% | 3.7% | 1.09 |
| Oryza sativa ssp. japonica | 42,211 | 1 | 5.41% | 3.7% | 0.68 |
| Oryza sativa ssp. indica | 49,202 | 1 | 6.3% | 3.7% | 0.59 |
| Brachypodium distachyon | 26,632 | 1 | 3.41% | 3.7% | 1.09 |
| Sorghum bicolor | 34,609 | 1 | 4.43% | 3.7% | 0.84 |
| Zea mays | 39,190 | 2 | 5.02% | 7.41% | 1.48 |
| Selaginella moellendorffii | 22,285 | 1 | 2.85% | 3.7% | 1.3 |
| Physcomitrella patens | 28,097 | 1 | 3.6% | 3.7% | 1.03 |
| Ostreococcus lucimarinus | 7,805 | 0 | 1% | 0% | 0 |
| Ostreococcus tauri | 7,994 | 0 | 1.02% | 0% | 0 |
| Micromonas sp. RCC299 | 10,204 | 1 | 1.31% | 3.7% | 2.82 |
| Volvox carteri | 15,544 | 1 | 1.99% | 3.7% | 1.86 |
| Chlamydomonas reinhardtii | 16,788 | 1 | 2.15% | 3.7% | 1.72 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Galegoids | 2 | 88,343 | 4 | 11.32% | 14.81% | 1.31 |
| Papilionoideae | 3 | 134,807 | 5 | 17.27% | 18.52% | 1.07 |
| Rosaceae | 2 | 98,355 | 4 | 12.6% | 14.81% | 1.18 |
| N2FixingClade | 5 | 233,162 | 9 | 29.87% | 33.33% | 1.12 |
| Euphorbiaceae | 2 | 61,969 | 2 | 7.94% | 7.41% | 0.93 |
| Malpighiales | 3 | 103,445 | 3 | 13.25% | 11.11% | 0.84 |
| Fabids | 8 | 336,607 | 12 | 43.12% | 44.44% | 1.03 |
| Arabidopsis | 2 | 60,086 | 2 | 7.7% | 7.41% | 0.96 |
| Brassicales | 3 | 88,113 | 2 | 11.29% | 7.41% | 0.66 |
| Malvids | 4 | 116,995 | 3 | 14.99% | 11.11% | 0.74 |
| Rosids | 12 | 453,602 | 15 | 58.1% | 55.56% | 0.96 |
| Eudicots | 13 | 480,106 | 16 | 61.5% | 59.26% | 0.96 |
| Oryza | 2 | 91,413 | 2 | 11.71% | 7.41% | 0.63 |
| BEPClade | 3 | 118,045 | 3 | 15.12% | 11.11% | 0.73 |
| PACCMADClade | 2 | 73,799 | 3 | 9.45% | 11.11% | 1.18 |
| Monocots | 5 | 191,844 | 6 | 24.57% | 22.22% | 0.9 |
| Angiosperms | 18 | 671,950 | 22 | 86.07% | 81.48% | 0.95 |
| VascularPlants | 19 | 694,235 | 23 | 88.93% | 85.19% | 0.96 |
| LandPlants | 20 | 722,332 | 24 | 92.53% | 88.89% | 0.96 |
| Ostreococcus | 2 | 15,799 | 0 | 2.02% | 0% | 0 |
| Mamiellales | 3 | 26,003 | 1 | 3.33% | 3.7% | 1.11 |
| Chlamydomonadales | 2 | 32,332 | 2 | 4.14% | 7.41% | 1.79 |
| Chlorophyta | 5 | 58,335 | 3 | 7.47% | 11.11% | 1.49 |
| GreenPlants | 25 | 780,667 | 27 | 100% | 100% | 1 |