Gene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM000789
- Gene count gene family
- 138
- Total coding gene count
- 780,667
- Keywords
-
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Lotus japonicus | 43,146 | 7 | 5.53% | 5.07% | 0.92 |
| Medicago truncatula | 45,197 | 4 | 5.79% | 2.9% | 0.5 |
| Glycine max | 46,464 | 13 | 5.95% | 9.42% | 1.58 |
| Malus domestica | 63,546 | 16 | 8.14% | 11.59% | 1.42 |
| Fragaria vesca | 34,809 | 8 | 4.46% | 5.8% | 1.3 |
| Manihot esculenta | 30,748 | 6 | 3.94% | 4.35% | 1.1 |
| Ricinus communis | 31,221 | 6 | 4% | 4.35% | 1.09 |
| Populus trichocarpa | 41,476 | 13 | 5.31% | 9.42% | 1.77 |
| Arabidopsis thaliana | 27,416 | 4 | 3.51% | 2.9% | 0.83 |
| Arabidopsis lyrata | 32,670 | 9 | 4.18% | 6.52% | 1.56 |
| Carica papaya | 28,027 | 4 | 3.59% | 2.9% | 0.81 |
| Theobroma cacao | 28,882 | 6 | 3.7% | 4.35% | 1.18 |
| Vitis vinifera | 26,504 | 5 | 3.4% | 3.62% | 1.06 |
| Oryza sativa ssp. japonica | 42,211 | 5 | 5.41% | 3.62% | 0.67 |
| Oryza sativa ssp. indica | 49,202 | 5 | 6.3% | 3.62% | 0.57 |
| Brachypodium distachyon | 26,632 | 7 | 3.41% | 5.07% | 1.49 |
| Sorghum bicolor | 34,609 | 3 | 4.43% | 2.17% | 0.49 |
| Zea mays | 39,190 | 4 | 5.02% | 2.9% | 0.58 |
| Selaginella moellendorffii | 22,285 | 2 | 2.85% | 1.45% | 0.51 |
| Physcomitrella patens | 28,097 | 4 | 3.6% | 2.9% | 0.81 |
| Ostreococcus lucimarinus | 7,805 | 1 | 1% | 0.72% | 0.72 |
| Ostreococcus tauri | 7,994 | 1 | 1.02% | 0.72% | 0.71 |
| Micromonas sp. RCC299 | 10,204 | 1 | 1.31% | 0.72% | 0.55 |
| Volvox carteri | 15,544 | 1 | 1.99% | 0.72% | 0.36 |
| Chlamydomonas reinhardtii | 16,788 | 3 | 2.15% | 2.17% | 1.01 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Galegoids | 2 | 88,343 | 11 | 11.32% | 7.97% | 0.7 |
| Papilionoideae | 3 | 134,807 | 24 | 17.27% | 17.39% | 1.01 |
| Rosaceae | 2 | 98,355 | 24 | 12.6% | 17.39% | 1.38 |
| N2FixingClade | 5 | 233,162 | 48 | 29.87% | 34.78% | 1.16 |
| Euphorbiaceae | 2 | 61,969 | 12 | 7.94% | 8.7% | 1.1 |
| Malpighiales | 3 | 103,445 | 25 | 13.25% | 18.12% | 1.37 |
| Fabids | 8 | 336,607 | 73 | 43.12% | 52.9% | 1.23 |
| Arabidopsis | 2 | 60,086 | 13 | 7.7% | 9.42% | 1.22 |
| Brassicales | 3 | 88,113 | 17 | 11.29% | 12.32% | 1.09 |
| Malvids | 4 | 116,995 | 23 | 14.99% | 16.67% | 1.11 |
| Rosids | 12 | 453,602 | 96 | 58.1% | 69.57% | 1.2 |
| Eudicots | 13 | 480,106 | 101 | 61.5% | 73.19% | 1.19 |
| Oryza | 2 | 91,413 | 10 | 11.71% | 7.25% | 0.62 |
| BEPClade | 3 | 118,045 | 17 | 15.12% | 12.32% | 0.81 |
| PACCMADClade | 2 | 73,799 | 7 | 9.45% | 5.07% | 0.54 |
| Monocots | 5 | 191,844 | 24 | 24.57% | 17.39% | 0.71 |
| Angiosperms | 18 | 671,950 | 125 | 86.07% | 90.58% | 1.05 |
| VascularPlants | 19 | 694,235 | 127 | 88.93% | 92.03% | 1.03 |
| LandPlants | 20 | 722,332 | 131 | 92.53% | 94.93% | 1.03 |
| Ostreococcus | 2 | 15,799 | 2 | 2.02% | 1.45% | 0.72 |
| Mamiellales | 3 | 26,003 | 3 | 3.33% | 2.17% | 0.65 |
| Chlamydomonadales | 2 | 32,332 | 4 | 4.14% | 2.9% | 0.7 |
| Chlorophyta | 5 | 58,335 | 7 | 7.47% | 5.07% | 0.68 |
| GreenPlants | 25 | 780,667 | 138 | 100% | 100% | 1 |