Gene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM000471
- Gene count gene family
- 206
- Total coding gene count
- 780,667
- Keywords
-
Organisms
Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|
Lotus japonicus | 43,146 | 9 | 5.53% | 4.37% | 0.79 |
Medicago truncatula | 45,197 | 24 | 5.79% | 11.65% | 2.01 |
Glycine max | 46,464 | 28 | 5.95% | 13.59% | 2.28 |
Malus domestica | 63,546 | 24 | 8.14% | 11.65% | 1.43 |
Fragaria vesca | 34,809 | 10 | 4.46% | 4.85% | 1.09 |
Manihot esculenta | 30,748 | 20 | 3.94% | 9.71% | 2.46 |
Ricinus communis | 31,221 | 6 | 4% | 2.91% | 0.73 |
Populus trichocarpa | 41,476 | 21 | 5.31% | 10.19% | 1.92 |
Arabidopsis thaliana | 27,416 | 5 | 3.51% | 2.43% | 0.69 |
Arabidopsis lyrata | 32,670 | 8 | 4.18% | 3.88% | 0.93 |
Carica papaya | 28,027 | 2 | 3.59% | 0.97% | 0.27 |
Theobroma cacao | 28,882 | 16 | 3.7% | 7.77% | 2.1 |
Vitis vinifera | 26,504 | 8 | 3.4% | 3.88% | 1.14 |
Oryza sativa ssp. japonica | 42,211 | 4 | 5.41% | 1.94% | 0.36 |
Oryza sativa ssp. indica | 49,202 | 6 | 6.3% | 2.91% | 0.46 |
Brachypodium distachyon | 26,632 | 4 | 3.41% | 1.94% | 0.57 |
Sorghum bicolor | 34,609 | 4 | 4.43% | 1.94% | 0.44 |
Zea mays | 39,190 | 3 | 5.02% | 1.46% | 0.29 |
Selaginella moellendorffii | 22,285 | 2 | 2.85% | 0.97% | 0.34 |
Physcomitrella patens | 28,097 | 2 | 3.6% | 0.97% | 0.27 |
Ostreococcus lucimarinus | 7,805 | 0 | 1% | 0% | 0 |
Ostreococcus tauri | 7,994 | 0 | 1.02% | 0% | 0 |
Micromonas sp. RCC299 | 10,204 | 0 | 1.31% | 0% | 0 |
Volvox carteri | 15,544 | 0 | 1.99% | 0% | 0 |
Chlamydomonas reinhardtii | 16,788 | 0 | 2.15% | 0% | 0 |
Phylogenetic clades
Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
---|---|---|---|---|---|---|
Galegoids | 2 | 88,343 | 33 | 11.32% | 16.02% | 1.42 |
Papilionoideae | 3 | 134,807 | 61 | 17.27% | 29.61% | 1.71 |
Rosaceae | 2 | 98,355 | 34 | 12.6% | 16.5% | 1.31 |
N2FixingClade | 5 | 233,162 | 95 | 29.87% | 46.12% | 1.54 |
Euphorbiaceae | 2 | 61,969 | 26 | 7.94% | 12.62% | 1.59 |
Malpighiales | 3 | 103,445 | 47 | 13.25% | 22.82% | 1.72 |
Fabids | 8 | 336,607 | 142 | 43.12% | 68.93% | 1.6 |
Arabidopsis | 2 | 60,086 | 13 | 7.7% | 6.31% | 0.82 |
Brassicales | 3 | 88,113 | 15 | 11.29% | 7.28% | 0.64 |
Malvids | 4 | 116,995 | 31 | 14.99% | 15.05% | 1 |
Rosids | 12 | 453,602 | 173 | 58.1% | 83.98% | 1.45 |
Eudicots | 13 | 480,106 | 181 | 61.5% | 87.86% | 1.43 |
Oryza | 2 | 91,413 | 10 | 11.71% | 4.85% | 0.41 |
BEPClade | 3 | 118,045 | 14 | 15.12% | 6.8% | 0.45 |
PACCMADClade | 2 | 73,799 | 7 | 9.45% | 3.4% | 0.36 |
Monocots | 5 | 191,844 | 21 | 24.57% | 10.19% | 0.41 |
Angiosperms | 18 | 671,950 | 202 | 86.07% | 98.06% | 1.14 |
VascularPlants | 19 | 694,235 | 204 | 88.93% | 99.03% | 1.11 |
LandPlants | 20 | 722,332 | 206 | 92.53% | 100% | 1.08 |
Ostreococcus | 2 | 15,799 | 0 | 2.02% | 0% | 0 |
Mamiellales | 3 | 26,003 | 0 | 3.33% | 0% | 0 |
Chlamydomonadales | 2 | 32,332 | 0 | 4.14% | 0% | 0 |
Chlorophyta | 5 | 58,335 | 0 | 7.47% | 0% | 0 |
GreenPlants | 25 | 780,667 | 206 | 100% | 100% | 1 |