Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_osa_45
Cluster type
GO
Species
Oryza sativa ssp. japonica
Chromosome
3
E-value
0.000000000288506
GO label
GO:0044464
GO description
cell part
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM0000017142293125
HOM0000034618203225
HOM0000044137184224
HOM0000102542122425
HOM0000171906118122
HOM0000371344102125
HOM000039131855125
HOM00007188536125
HOM00008479642120
HOM00009374750125
HOM00009474727125
HOM00011957029125
HOM00012455528120
HOM00013452829322
HOM00014549016121
HOM00017541815125
HOM00018140716123
HOM00021735311125
HOM00024832211425
HOM00025531620125
HOM00026131213124
HOM00028928812225
HOM00030627718125
HOM00031427211125
HOM00031527212125
HOM00032326814120
HOM00036624815122
HOM0003802409125
HOM00047320516120
HOM00047520510125
HOM00047820413123
HOM00048020313122
HOM0005321874125
HOM00053818611125
HOM00055318211121
HOM0006331636125
HOM0007221495120
HOM0007461459120
HOM0007681427125
HOM0008891254120
HOM0009311204515
HOM0009961134124
HOM0010111115125
HOM0010451075125
HOM001164984125
HOM001324884122
HOM001578751514
HOM001586743125
HOM001607743125
HOM001660712122
HOM001829672123
HOM001835672125
HOM001886654120
HOM001896653124
HOM001994623123
HOM002104602125
HOM002901443123
HOM003254401124
HOM003266401123
HOM003359391121
HOM003536371125
HOM003609372119
HOM004013343117
HOM004016341125
HOM004171331119
HOM004274332120
HOM004531311120
HOM004698301123
HOM005039281120
HOM005053281123
HOM005068282122
HOM005618261116
HOM005783251118
HOM005853241122
HOM005880241118
HOM005934241122
HOM006204221119
HOM006480211116
HOM006784191113
HOM00755613325
HOM0084539225
HOM0084749552
HOM0091507115
HOM0093627512
HOM0101886215
HOM0116065115
HOM0117595213
HOM0121575115
HOM0126434114
HOM0131694212
HOM0144324114
HOM0168013212
HOM0191182112
HOM0215632112
HOM0233862112
HOM0296142112
HOM0321982112

Gene information

In cluster Gene id Description Gene type Gene family
V OS03G06670Core histone H2A%2FH2B%2FH3%2FH4 domain containing protein, putative, expressedCoding geneHOM000175 ORTHO000704
X OS03G06674hypothetical proteinCoding genesingleton
V OS03G06680plant%2Dspecific domain TIGR01615 family protein, expressedCoding geneHOM000315 ORTHO021899
X OS03G06690hypothetical proteinCoding geneHOM031466 ORTHO063013
V OS03G067003%2Dketoacyl%2DCoA synthase, putative, expressedCoding geneHOM000134 ORTHO183843
V OS03G067053%2Dketoacyl%2DCoA synthase, putative, expressedCoding geneHOM000134 ORTHO237645
V OS03G06710PPR repeat domain containing protein, putative, expressedCoding geneHOM000003 ORTHO005438
X OS03G06715expressed proteinCoding genesingleton
V OS03G06720expressed proteinCoding geneHOM004171 ORTHO002880
X OS03G06730plant protein of unknown function domain containing protein, expressedCoding geneHOM000081 ORTHO002880
V OS03G06740glutathione reductase, putative, expressedCoding geneHOM001994 ORTHO005856
V OS03G06750expressed proteinCoding geneHOM001578 ORTHO032047
X OS03G06760exocyst complex component 6, putative, expressedCoding geneHOM000455 ORTHO000541
V OS03G06770hypothetical proteinCoding geneHOM008474 ORTHO038457
V OS03G06780hypothetical proteinCoding geneHOM008474 ORTHO063014
V OS03G06790hypothetical proteinCoding geneHOM008474 ORTHO038457
V OS03G06800hypothetical proteinCoding geneHOM008474 ORTHO063015
V OS03G06810expressed proteinCoding geneHOM008474 ORTHO063016
V OS03G06820hypothetical proteinCoding geneHOM021563 ORTHO063017
V OS03G06830hypothetical proteinCoding genesingleton
X OS03G06835expressed proteinCoding genesingleton
X OS03G06840GRF zinc finger family protein, expressedCoding geneHOM007818 ORTHO017620
V OS03G06850B3 DNA binding domain containing protein, expressedCoding geneHOM013169 ORTHO063018
X OS03G06860transposon protein, putative, unclassified, expressedTransposon
V OS03G06870expressed proteinCoding geneHOM032198 ORTHO063019
V OS03G06880kinase, pfkB family, putative, expressedCoding geneHOM005853 ORTHO006201
X OS03G06890DUF593 domain containing proteinCoding geneHOM001036 ORTHO021898
V OS03G06900DNA topoisomerase 3 protein, putative, expressedCoding geneHOM001835 ORTHO005388
X OS03G06910PPR repeat containing proteinCoding geneHOM000003 ORTHO010825
V OS03G06920DRD1, putative, expressedCoding geneHOM000538 ORTHO001455
X OS03G06930homeodomain protein, putative, expressedCoding geneHOM000277 ORTHO021897
V OS03G06940beta%2Dgalactosidase, putative, expressedCoding geneHOM000145 ORTHO000009
V OS03G06950ubiquitin carboxyl%2Dterminal hydrolase domain containing protein, expressedCoding geneHOM003359 ORTHO003099
V OS03G06960vesicle%2Dassociated membrane protein, putative, expressedCoding geneHOM000380 ORTHO000172
X OS03G06970tetratricopeptide repeat domain containing protein, expressedCoding geneHOM000831 ORTHO021896
X OS03G06980nucleic acid binding protein, putative, expressedCoding geneHOM000853 ORTHO063020
V OS03G06990oxidoreductase, putativeCoding geneHOM000289 ORTHO147421
V OS03G07000oxidoreductase, putative, expressedCoding geneHOM000289 ORTHO063021
X OS03G07010retrotransposon protein, putative, unclassifiedTransposon
X OS03G07020retrotransposon protein, putative, unclassifiedTransposon
X OS03G07030retrotransposon protein, putative, unclassifiedTransposon
V OS03G07040retrotransposon protein, putative, unclassifiedTransposon
X OS03G07050retrotransposon protein, putative, unclassifiedTransposon
X OS03G07060glycerol%2D3%2Dphosphate acyltransferase, putativeCoding geneHOM000384 ORTHO063022
X OS03G07070hypothetical proteinCoding geneHOM027473 ORTHO063023
X OS03G07080endonuclease%2Fexonuclease%2Fphosphatase family domain containing protein, expressedCoding geneHOM000715 ORTHO001276
V OS03G07090hypothetical proteinCoding geneHOM009362 ORTHO020730
V OS03G07100LTPL82 %2D Protease inhibitor%2Fseed storage%2FLTP family protein precursor, expressedCoding geneHOM000889 ORTHO021895
X OS03G07110calmodulin%2Dbinding protein, putative, expressedCoding geneHOM000673 ORTHO014233
V OS03G07120expressed proteinCoding geneHOM000478 ORTHO012583
V OS03G07130RING finger protein 13, putative, expressedCoding geneHOM001660 ORTHO002413
V OS03G07140male sterility protein, putative, expressedCoding geneHOM000480 ORTHO009287
V OS03G07150OsPP2Ac%2D5 %2D Phosphatase 2A isoform 5 belonging to family 2, expressedCoding geneHOM000094 ORTHO000650
X OS03G07160OsFBK11 %2D F%2Dbox domain and kelch repeat containing protein, expressedCoding geneHOM000449 ORTHO001231
V OS03G07170lactose permease%2Drelated, putative, expressedCoding geneHOM004274 ORTHO003907
V OS03G07180embryonic protein DC%2D8, putative, expressedCoding geneHOM012157 ORTHO063024
V OS03G07190expressed proteinCoding geneHOM005880 ORTHO009862
V OS03G07200expressed proteinCoding geneHOM004013 ORTHO006751
V OS03G07220PPR repeat domain containing protein, putativeCoding geneHOM000003 ORTHO009505
V OS03G07226thioredoxin, putative, expressedCoding geneHOM001164 ORTHO038458
X OS03G07234pentatricopeptide, putativeCoding geneHOM000001 ORTHO010205
V OS03G07250cytochrome P450, putative, expressedCoding geneHOM000093 ORTHO008470
X OS03G07260tetratricopeptide repeat domain containing proteinCoding geneHOM001356 ORTHO001418
X OS03G07270glycine%2Drich cell wall protein, putative, expressedCoding geneHOM007606 ORTHO133473
V OS03G07290structural constituent of ribosome, putative, expressedCoding geneHOM001324 ORTHO003315
V OS03G07300ribulose%2Dphosphate 3%2Depimerase, chloroplast precursor, putative, expressedCoding geneHOM001829 ORTHO004139
X OS03G07310growth regulator related protein, putative, expressedCoding geneHOM000088 ORTHO006224
X OS03G07320transposon protein, putative, Pong sub%2DclassTransposon
X OS03G07330pentatricopeptide, putative, expressedCoding geneHOM000001 ORTHO012182
V OS03G07340ribosomal L18p%2FL5e family protein, putative, expressedCoding geneHOM005783 ORTHO009147
V OS03G07350CSLA4 %2D cellulose synthase%2Dlike family A%3B mannan synthase, expressedCoding geneHOM000306 ORTHO000120
X OS03G07360expressed proteinCoding geneHOM000099 ORTHO019163
X OS03G07370HNH endonuclease domain%2Dcontaining protein, putative, expressedCoding geneHOM002697 ORTHO011397
X OS03G07380expressed proteinCoding geneHOM002605 ORTHO003531
V OS03G07390hypothetical proteinCoding genesingleton
X OS03G07400expressed proteinCoding geneHOM005745 ORTHO009362
X OS03G07410expressed proteinCoding geneHOM031816 ORTHO063025
V OS03G074203%2Ddehydroquinate synthase, putative, expressedCoding geneHOM003266 ORTHO004475
V OS03G07430protein kinase domain containing protein, expressedCoding geneHOM000004 ORTHO006225
V OS03G07440putativ eribonuclease P, putative, expressedCoding geneHOM005053 ORTHO007532
V OS03G07450homeobox associated leucine zipper, putative, expressedCoding geneHOM000124 ORTHO007040
X OS03G07460retrotransposon protein, putative, unclassifiedTransposon
X OS03G07470glutaredoxin, putativeCoding geneHOM000198 ORTHO021894
V OS03G07480sucrose transporter, putativ, expressedCoding geneHOM000722 ORTHO015310
X OS03G07490hypothetical proteinCoding geneHOM022327 ORTHO063026
X OS03G07500hypothetical proteinCoding geneHOM026141 ORTHO063027
X OS03G07510expressed proteinCoding geneHOM000366 ORTHO036187
X OS03G07530OsFBK12 %2D F%2Dbox domain and kelch repeat containing protein, expressedCoding geneHOM000762 ORTHO015147
V OS03G07540bHLH family protein, putativeCoding geneHOM000366 ORTHO019162
V OS03G07560hypothetical proteinCoding geneHOM016801 ORTHO214031
V OS03G07570aminotransferase, putative, expressedCoding geneHOM000633 ORTHO000532
V OS03G07580OsNucAP1 %2D Putative Nucleoporin Autopeptidase homologue, expressedCoding geneHOM006204 ORTHO006377
X OS03G07590hypothetical proteinCoding geneHOM012189 ORTHO063028
X OS03G07600calcium%2Dbinding protein, putative, expressedCoding geneHOM001074 ORTHO022189
V OS03G07610conserved hypothetical proteinCoding geneHOM008453 ORTHO063029
V OS03G07620conserved hypothetical proteinCoding geneHOM008453 ORTHO026338
X OS03G07630retrotransposon protein, putative, unclassifiedTransposon
X OS03G07640transposon protein, putative, CACTA, En%2FSpm sub%2DclassTransposon
V OS03G07650expressed proteinCoding geneHOM007556 ORTHO026337
V OS03G07660conserved hypothetical proteinCoding geneHOM007556 ORTHO063030
X OS03G07670transposon protein, putative, CACTA, En%2FSpm sub%2DclassTransposon
X OS03G07680transposon protein, putative, CACTA, En%2FSpm sub%2DclassTransposon
X OS03G07690hypothetical proteinCoding genesingleton
V OS03G07700expressed proteinCoding geneHOM011606 ORTHO021892
X OS03G07710hypothetical proteinCoding genesingleton
V OS03G07720conserved hypothetical proteinCoding geneHOM011759 ORTHO101101
V OS03G07730hypothetical proteinCoding geneHOM010188 ORTHO119520
X OS03G07739expressed proteinCoding genesingleton
X OS03G07750expressed proteinCoding geneHOM001414 ORTHO038459
X OS03G07760hypothetical proteinCoding geneHOM000003 ORTHO265300
X OS03G07770transposon protein, putative, unclassifiedTransposon
X OS03G07780transposon protein, putative, unclassifiedTransposon
X OS03G07790zinc finger, C3HC4 type domain containing protein, expressedCoding geneHOM000196 ORTHO009771
V OS03G07800RNA recognition motif containing protein, putative, expressedCoding geneHOM000475 ORTHO005240
X OS03G07810expressed proteinCoding geneHOM003986 ORTHO019161
V OS03G07820exostosin family protein, putative, expressedCoding geneHOM000532 ORTHO004506
X OS03G07830AP2 domain containing proteinCoding geneHOM000010 ORTHO003950
V OS03G07840adenylosuccinate synthetase, chloroplast precursor, putative, expressedCoding geneHOM000996 ORTHO002234
V OS03G07850tRNA methyltransferase, putative, expressedCoding geneHOM003254 ORTHO003767
X OS03G07870expressed proteinCoding geneHOM005010 ORTHO016355
V OS03G07880nuclear transcription factor Y subunit, putative, expressedCoding geneHOM000553 ORTHO011050
V OS03G07890mitochondrial carrier protein, putative, expressedCoding geneHOM001011 ORTHO001811
V OS03G07910nitrilase, putative, expressedCoding geneHOM001586 ORTHO005216
V OS03G07920expressed proteinCoding geneHOM009150 ORTHO017666
X OS03G07930retrotransposon protein, putative, Ty3%2Dgypsy subclassTransposon
V OS03G07940AP2 domain containing protein, expressedCoding geneHOM000119 ORTHO009956
V OS03G07950expressed proteinCoding genesingleton
V OS03G07960expressed proteinCoding geneHOM005934 ORTHO007878
X OS03G07970expressed proteinCoding geneHOM001414 ORTHO063031
V OS03G07980expressed proteinCoding geneHOM006784 ORTHO013249
V OS03G07990acetyltransferase, GNAT family, putative, expressedCoding geneHOM006480 ORTHO009327
X OS03G07994expressed proteinCoding genesingleton
X OS03G08000expressed proteinCoding geneHOM004411 ORTHO004896
V OS03G08010elongation factor Tu, putativeCoding geneHOM000248 ORTHO000140
V OS03G08020elongation factor Tu, putative, expressedCoding geneHOM000248 ORTHO000140
V OS03G08030expressed proteinCoding geneHOM029614 ORTHO063032
V OS03G08040hypothetical proteinCoding geneHOM023386 ORTHO063033
V OS03G08050elongation factor Tu, putative, expressedCoding geneHOM000248 ORTHO000140
V OS03G08060elongation factor Tu, putative, expressedCoding geneHOM000248 ORTHO000140
V OS03G08070copper%2Dtransporting ATPase PAA1, putative, expressedCoding geneHOM000217 ORTHO006637
V OS03G08080YGGT family protein, putative, expressedCoding geneHOM002104 ORTHO004010
X OS03G08090hydrolase, alpha%2Fbeta fold family protein, putative, expressedCoding geneHOM000450 ORTHO026335
X OS03G08100hydrolase, alpha%2Fbeta fold family protein, putative, expressedCoding geneHOM000450 ORTHO021891
X OS03G08110hydrolase protein, putative, expressedCoding geneHOM000450 ORTHO011791
X OS03G08114expressed proteinCoding genesingleton
X OS03G08120retrotransposon protein, putative, unclassifiedTransposon
X OS03G08130hypothetical proteinCoding geneHOM001414 ORTHO019158
X OS03G08140tubulin%2D%2Dtyrosine ligase%2Dlike protein 12, putative, expressedCoding geneHOM006671 ORTHO009969
V OS03G08150Cupin domain containing protein, expressedCoding geneHOM000084 ORTHO010571
X OS03G08160hypothetical proteinCoding geneHOM001414 ORTHO021955
X OS03G08170protein kinase APK1B, chloroplast precursor, putative, expressedCoding geneHOM000004 ORTHO007841
V OS03G08180hypothetical proteinCoding genesingleton
V OS03G08190hypothetical proteinCoding genesingleton
X OS03G08200DUF567 domain containing protein, putative, expressedCoding geneHOM004505 ORTHO021890
X OS03G08210hypothetical proteinCoding geneHOM025534 ORTHO063034
V OS03G08220lipoxygenase protein, putative, expressedCoding geneHOM000181 ORTHO000011
V OS03G08230sodium%2Fcalcium exchanger protein, putative, expressedCoding geneHOM000255 ORTHO002654
X OS03G08240hypothetical proteinCoding geneHOM024359 ORTHO063035
V OS03G08250expressed proteinCoding geneHOM000473 ORTHO029711
V OS03G08260hypothetical proteinCoding geneHOM019118 ORTHO032284
V OS03G08270ataxin%2D2 C%2Dterminal region family protein, expressedCoding geneHOM002901 ORTHO019160
V OS03G08280peptidase, T1 family, putative, expressedCoding geneHOM000261 ORTHO002455
X OS03G08284expressed proteinCoding genesingleton
V OS03G08290expressed proteinCoding geneHOM014432 ORTHO026334
V OS03G08300glycosyl transferase, group 1 domain containing protein, expressedCoding geneHOM001045 ORTHO002918
X OS03G08310ZIM domain containing protein, putative, expressedCoding geneHOM009773 ORTHO019159
X OS03G08320ZIM domain containing protein, putative, expressedCoding geneHOM001345 ORTHO021889
X OS03G08330ZIM domain containing protein, putative, expressedCoding geneHOM005650 ORTHO014232
X OS03G08350ubiquitin carboxyl%2Dterminal hydrolase, family 1, putative, expressedCoding geneHOM000264 ORTHO010226
V OS03G083603%2Dketoacyl%2DCoA synthase 10, putative, expressedCoding geneHOM000134 ORTHO000020
X OS03G08370transposon protein, putative, unclassified, expressedTransposon
V OS03G08380ABC transporter, ATP%2Dbinding protein, putative, expressedCoding geneHOM000071 ORTHO011613
X OS03G08390expressed proteinCoding geneHOM000732 ORTHO010705
X OS03G08400retrotransposon protein, putative, unclassifiedTransposon
V OS03G08410flavin%2Dcontaining monooxygenase family protein, putative, expressedCoding geneHOM000746 ORTHO001781
V OS03G08420hypothetical proteinCoding geneHOM000323 ORTHO063036
X OS03G08430SAC domain containing protein, putative, expressedCoding geneHOM001013 ORTHO000210
V OS03G08440ribosomal protein S2, putative, expressedCoding geneHOM001607 ORTHO000497
V OS03G08450eukaryotic translation initiation factor 3 subunit K, putative, expressedCoding geneHOM004531 ORTHO005973
V OS03G08460AP2 domain containing protein, expressedCoding geneHOM000010 ORTHO029712
V OS03G08470AP2 domain containing protein, expressedCoding geneHOM000010 ORTHO032283
V OS03G08480rho termination factor, N%2Dterminal domain containing protein, expressedCoding geneHOM001896 ORTHO009123
V OS03G08490AP2 domain containing protein, expressedCoding geneHOM000010 ORTHO038460
V OS03G08500AP2 domain containing protein, expressedCoding geneHOM000010 ORTHO021888
X OS03G08510hypothetical proteinCoding geneHOM023496 ORTHO063037
X OS03G08520DUF581 domain containing protein, expressedCoding geneHOM000102 ORTHO021887
X OS03G08530aminotransferase, classes I and II, domain containing protein, expressedCoding geneHOM001299 ORTHO001220
V OS03G08540expressed proteinCoding geneHOM012643 ORTHO029713
V OS03G08550STRUBBELIG%2DRECEPTOR FAMILY 6 precursor, putative, expressedCoding geneHOM000004 ORTHO001429
V OS03G08560plasma membrane ATPase, putative, expressedCoding geneHOM000314 ORTHO000036
V OS03G08570amine oxidase, flavin%2Dcontaining, domain containing protein, expressedCoding geneHOM003536 ORTHO003192
X OS03G08580expressed proteinCoding geneHOM009073 ORTHO009652
X OS03G08590hypothetical proteinCoding geneHOM013504 ORTHO105759
X OS03G08600glycosyl transferase, putative, expressedCoding geneHOM001012 ORTHO005972
V OS03G08610leucine%2Drich repeat family protein, putative, expressedCoding geneHOM000017 ORTHO012152
X OS03G08620B3 DNA binding domain containing protein, expressedCoding geneHOM000783 ORTHO017665
V OS03G08624dihydroflavonol%2D4%2Dreductase, putative, expressedCoding geneHOM001886 ORTHO011477
X OS03G08630NAD%2Ddependent epimerase%2Fdehydratase, putative, expressedCoding geneHOM001886 ORTHO093187
V OS03G08640ORC2 %2D Putative origin recognition complex subunit 2, expressedCoding geneHOM004016 ORTHO005085
V OS03G08660serine acetyltransferase protein, putativeCoding geneHOM000768 ORTHO107647
X OS03G08670hypothetical proteinCoding geneHOM025020 ORTHO063038
V OS03G08680pentatricopeptide, putative, expressedCoding geneHOM000001 ORTHO021885
V OS03G08690expressed proteinCoding geneHOM000931 ORTHO103508
V OS03G08700expressed proteinCoding geneHOM005039 ORTHO006690
X OS03G08710THION26 %2D Plant thionin family protein precursor, expressedCoding geneHOM000999 ORTHO004146
X OS03G08720transferase family protein, putative, expressedCoding geneHOM000062 ORTHO019156
V OS03G08730uroporphyrinogen III synthase, putative, expressedCoding geneHOM004698 ORTHO007182
V OS03G08740expressed proteinCoding geneHOM005618 ORTHO007559
V OS03G08754OsMADS47 %2D MADS%2Dbox family gene with MIKCc type%2Dbox, expressedCoding geneHOM000039 ORTHO005050
V OS03G08770modifier of rudimentary protein, expressedCoding geneHOM003609 ORTHO003458
V OS03G08790aspartic proteinase nepenthesin precursor, putative, expressedCoding geneHOM000037 ORTHO009850
V OS03G08800CutA, chloroplast precursor, putative, expressedCoding geneHOM005068 ORTHO004435