Functional Clustering 
Cluster information
Cluster overview
- Cluster id
- CH_osa_3
- Cluster type
- GO
- Species
- Oryza sativa ssp. japonica
- Chromosome
- chloroplast
- E-value
- 2.80621e-42
- GO label
- GO:0032991
- GO description
- macromolecular complex
- Overview
- Download
Statistics
| Gene family | Num genes total | Num genes species | Num genes cluster | Num species |
|---|---|---|---|---|
| HOM000211 | 360 | 30 | 2 | 25 |
| HOM000215 | 356 | 26 | 6 | 25 |
| HOM000395 | 234 | 13 | 1 | 25 |
| HOM000462 | 210 | 20 | 2 | 24 |
| HOM000482 | 202 | 17 | 2 | 23 |
| HOM000550 | 182 | 7 | 1 | 24 |
| HOM000575 | 175 | 14 | 3 | 23 |
| HOM000614 | 165 | 17 | 3 | 24 |
| HOM000619 | 164 | 13 | 2 | 23 |
| HOM000739 | 146 | 17 | 3 | 23 |
| HOM000770 | 141 | 15 | 4 | 25 |
| HOM000775 | 140 | 10 | 2 | 23 |
| HOM000961 | 117 | 9 | 1 | 23 |
| HOM001029 | 109 | 17 | 2 | 23 |
| HOM001081 | 105 | 11 | 1 | 23 |
| HOM001436 | 82 | 5 | 2 | 22 |
| HOM001724 | 70 | 8 | 2 | 20 |
| HOM001874 | 66 | 5 | 1 | 25 |
| HOM002419 | 53 | 1 | 1 | 23 |
| HOM002716 | 47 | 6 | 1 | 19 |
| HOM002742 | 47 | 4 | 1 | 19 |
| HOM004406 | 32 | 4 | 1 | 19 |
| HOM005581 | 26 | 5 | 1 | 19 |
| HOM006202 | 23 | 1 | 1 | 13 |
| HOM006468 | 21 | 1 | 1 | 18 |
| HOM006756 | 19 | 1 | 1 | 19 |
| HOM010628 | 6 | 1 | 1 | 5 |
Gene information
| In cluster | Gene id | Description | Gene type | Gene family |
|---|---|---|---|---|
| V | OSCG00010 | psbA;PSII 32kDa protein;protein_id=CAA34007.1; | Coding gene | HOM000961 ORTHO001130 |
| X | OSCG00020 | tRNA-Lys (UUU); | RNA gene | |
| X | OSCG00030 | protein_id=CAA34008.1; | Coding gene | HOM000961 ORTHO007737 |
| V | OSCG00040 | rps16;ribosomal protein S16;protein_id=CAA34009.1; | Coding gene | HOM000395 ORTHO006335 |
| X | OSCG00050 | tRNA-Gln (UUG); | RNA gene | |
| X | OSCG00060 | psbK;PSII K protein;protein_id=CAA34010.1; | Coding gene | HOM002716 ORTHO005608 |
| V | OSCG00070 | psbI;PSII I protein;protein_id=CAA34011.1; | Coding gene | HOM002716 ORTHO012703 |
| X | OSCG00080 | tRNA-Ser (GCU); | RNA gene | |
| X | OSCG00090 | protein_id=CAA34012.1; | Coding gene | HOM014368 ORTHO029601 |
| V | OSCG00100 | psbD;PSII D2 protein;protein_id=CAA34013.1; | Coding gene | HOM000619 ORTHO002969 |
| V | OSCG00110 | psbC;PSII 43kDa protein;protein_id=CAA34014.1; | Coding gene | HOM000619 ORTHO002407 |
| X | OSCG00120 | tRNA-Ser (UGA); | RNA gene | |
| X | OSCG00130 | protein_id=CAA34015.1; | Coding gene | HOM000619 ORTHO004311 |
| X | OSCG00140 | tRNA-Gly (GCC); | RNA gene | |
| X | OSCG00150 | tRNA-Gly (GCC); | RNA gene | |
| X | OSCG00160 | tRNA-fMet (CAU); | RNA gene | |
| X | OSCG00170 | tRNA-Gly (UCC); | RNA gene | |
| X | OSCG00180 | protein_id=CAA33982.1; | Coding gene | HOM012162 ORTHO025061 |
| X | OSCG00190 | protein_id=CAA33983.1; | Coding gene | HOM008363 ORTHO017303 |
| X | OSCG00200 | tRNA-Thr (GGU); | RNA gene | |
| X | OSCG00210 | tRNA-Thr (GGU); | RNA gene | |
| X | OSCG00220 | tRNA-Glu (UCC); | RNA gene | |
| X | OSCG00230 | tRNA-Tyr (GUA); | RNA gene | |
| X | OSCG00240 | tRNA-Asp (GUC); | RNA gene | |
| V | OSCG00250 | psbM;PSII low MW protein;protein_id=CAA33984.1; | Coding gene | HOM000550 ORTHO013224 |
| X | OSCG00260 | protein_id=CAA33985.1; | Coding gene | HOM001026 ORTHO000110 |
| X | OSCG00270 | tRNA-Cys (GCA); | RNA gene | |
| X | OSCG00280 | rpoB;RNA polymerase beta subunit;protein_id=CAA33986.1; | Coding gene | HOM000550 ORTHO001338 |
| X | OSCG00290 | rpoC1;RNA polymerase beta' subunit-1;protein_id=CAA33987.1; | Coding gene | HOM000550 ORTHO002151 |
| X | OSCG00300 | rpoC2;RNA polymerase beta' subunit-2;protein_id=CAA33988.1; | Coding gene | HOM001193 ORTHO001668 |
| V | OSCG00310 | rps2;ribosomal protein S2;protein_id=CAA33989.1; | Coding gene | HOM000215 ORTHO002665 |
| V | OSCG00320 | atpI;ATPase a subunit;protein_id=CAA33990.1; | Coding gene | HOM000215 ORTHO005607 |
| V | OSCG00330 | atpH;ATPase III subunit;protein_id=CAA33991.1; | Coding gene | HOM000215 ORTHO001974 |
| V | OSCG00340 | atpF;ATPase I subunit;protein_id=CAA33992.1; | Coding gene | HOM005581 ORTHO007020 |
| V | OSCG00350 | atpA;ATPase alpha subunit;protein_id=CAA33993.1; | Coding gene | HOM000215 ORTHO004312 |
| X | OSCG00360 | tRNA-Arg (UCU); | RNA gene | |
| X | OSCG00370 | RNA gene | ||
| V | OSCG00380 | rps14;ribosomal protein S14;protein_id=CAA33994.1; | Coding gene | HOM000575 ORTHO005606 |
| V | OSCG00390 | psaB;PSI P700 apoprotein A2;protein_id=CAA33995.1; | Coding gene | HOM000575 ORTHO001434 |
| V | OSCG00400 | psaA;PSI P700 apoprotein A1;protein_id=CAA33996.1; | Coding gene | HOM000575 ORTHO002664 |
| X | OSCG00410 | protein_id=CAA33997.1; | Coding gene | HOM002384 ORTHO006334 |
| X | OSCG00420 | tRNA-Ser (GGA); | RNA gene | |
| V | OSCG00430 | protein_id=CAA33998.1; | Coding gene | HOM002742 ORTHO001806 |
| X | OSCG00440 | tRNA-Thr (UGU); | RNA gene | |
| X | OSCG00450 | tRNA-Leu (UAA); | RNA gene | |
| X | OSCG00460 | tRNA-Phe (GAA); | RNA gene | |
| X | OSCG00470 | protein_id=CAA33999.1; | Coding gene | HOM000211 ORTHO002150 |
| X | OSCG00480 | protein_id=CAA34000.1; | Coding gene | HOM000211 ORTHO005609 |
| X | OSCG00490 | protein_id=CAA34001.1; | Coding gene | HOM000211 ORTHO007019 |
| X | OSCG00500 | tRNA-Val (UAC); | RNA gene | |
| X | OSCG00510 | tRNA-Met (CAU); | RNA gene | |
| V | OSCG00520 | protein_id=CAA34002.1; | Coding gene | HOM000211 ORTHO007549 |
| V | OSCG00530 | protein_id=CAA34003.1; | Coding gene | HOM000211 ORTHO001337 |
| X | OSCG00540 | protein_id=CAA34004.1; | Coding gene | HOM000775 ORTHO001077 |
| X | OSCG00550 | protein_id=CAA34005.1; | Coding gene | singleton |
| X | OSCG00560 | protein_id=CAA34006.1; | Coding gene | HOM017448 ORTHO038768 |
| X | OSCG00570 | protein_id=CAA33956.1; | Coding gene | HOM013174 ORTHO021138 |
| V | OSCG00580 | protein_id=CAA33957.1; | Coding gene | HOM002419 ORTHO005610 |
| X | OSCG00590 | protein_id=CAA33958.1; | Coding gene | HOM003137 ORTHO002663 |
| X | OSCG00600 | protein_id=CAA33959.1; | Coding gene | singleton |
| X | OSCG00610 | protein_id=CAA33960.1; | Coding gene | HOM001150 ORTHO009935 |
| X | OSCG00620 | petA;cytochrome f;protein_id=CAA33961.1; | Coding gene | HOM001150 ORTHO002149 |
| V | OSCG00630 | protein_id=CAA33962.1; | Coding gene | HOM006202 ORTHO199487 |
| V | OSCG00640 | psbL;PSII L protein;protein_id=CAA33963.1; | Coding gene | HOM001436 ORTHO006120 |
| V | OSCG00650 | psbF;PSII cytochrome b559;protein_id=CAA33964.1; | Coding gene | HOM006756 ORTHO010425 |
| V | OSCG00660 | psbE;PSII cytochrome b559;protein_id=CAA33965.1; | Coding gene | HOM001436 ORTHO001236 |
| X | OSCG00670 | protein_id=CAA33966.1; | Coding gene | singleton |
| X | OSCG00680 | petE;cytochrome b /f complex subunit 5;protein_id=CAA33967.1; | Coding gene | HOM006438 ORTHO010426 |
| X | OSCG00690 | tRNA-Trp (CCA); | RNA gene | |
| X | OSCG00700 | tRNA-Pro (UGG); | RNA gene | |
| V | OSCG00710 | protein_id=CAA33968.1; | Coding gene | HOM000215 ORTHO013725 |
| V | OSCG00720 | rpl33;ribosomal protein L33;protein_id=CAA33969.1; | Coding gene | HOM000215 ORTHO002968 |
| V | OSCG00730 | rps18;ribosomal protein S18;protein_id=CAA33970.1; | Coding gene | HOM004406 ORTHO004310 |
| V | OSCG00740 | rpl20;ribosomal protein L20;protein_id=CAA33971.1; | Coding gene | HOM001874 ORTHO009220 |
| V | OSCG00750 | rps12;ribosomal protein S12;protein_id=CAA33929.1; | Coding gene | HOM001029 ORTHO011655 |
| X | OSCG00760 | protein_id=CAA33972.1; | Coding gene | HOM000202 ORTHO007021 |
| V | OSCG00770 | psbB;PSII 47kDa protein;protein_id=CAA33973.1; | Coding gene | HOM000462 ORTHO002967 |
| V | OSCG00780 | protein_id=CAA33974.1; | Coding gene | singleton |
| V | OSCG00790 | psbN;PSII low MW protein;protein_id=CAA33975.1; | Coding gene | HOM006468 ORTHO012655 |
| V | OSCG00800 | psbH;PSII 10kDa phosphoprotein;protein_id=CAA33976.1; | Coding gene | HOM000462 ORTHO002966 |
| X | OSCG00810 | petB;cytochrome B6;protein_id=CAA33977.1; | Coding gene | HOM000462 ORTHO004309 |
| X | OSCG00820 | petD;cytochrome b/f;protein_id=CAA33978.1; | Coding gene | HOM000462 ORTHO002965 |
| X | OSCG00830 | rpoA;RNA polymerase alpha subunit;protein_id=CAA33979.1; | Coding gene | HOM001081 ORTHO001805 |
| V | OSCG00840 | rps11;ribosomal protein S11;protein_id=CAA33980.1; | Coding gene | HOM001081 ORTHO014576 |
| V | OSCG00850 | rpl36;ribosomal protein L36;protein_id=CAA33981.1; | Coding gene | singleton |
| X | OSCG00860 | infA;initiation factor 1;protein_id=CAA33930.1; | Coding gene | HOM004268 ORTHO002804 |
| V | OSCG00870 | rps8;ribosomal protein S8;protein_id=CAA33931.1; | Coding gene | HOM000614 ORTHO003780 |
| V | OSCG00880 | rpl14;ribosomal protein L14;protein_id=CAA33932.1; | Coding gene | HOM000614 ORTHO002148 |
| V | OSCG00890 | rpl16;ribosomal protein L16;protein_id=CAA33933.1; | Coding gene | HOM000614 ORTHO001799 |
| V | OSCG00900 | rps3;ribosomal protein S3;protein_id=CAA33934.1; | Coding gene | HOM000739 ORTHO001954 |
| V | OSCG00910 | rpl22;ribosomal protein L22;protein_id=CAA33935.1; | Coding gene | HOM000739 ORTHO004308 |
| X | OSCG00920 | RNA gene | ||
| V | OSCG00930 | protein_id=CAA33936.1; | Coding gene | HOM000770 ORTHO020744 |
| X | OSCG00940 | tRNA-His (GUG); | RNA gene | |
| V | OSCG00950 | rp12;ribosomal protein L2;protein_id=CAA33924.1; | Coding gene | HOM000770 ORTHO000561 |
| X | OSCG00960 | protein_id=CAA33937.1; | Coding gene | HOM004786 ORTHO009010 |
| V | OSCG00970 | rpl23;ribosomal protein L23;protein_id=CAA33938.1; | Coding gene | HOM001724 ORTHO000441 |
| X | OSCG00980 | tRNA-Ile (CAU); | RNA gene | |
| X | OSCG00990 | protein_id=CAA33939.1; | Coding gene | HOM031095 ORTHO070615 |
| X | OSCG01000 | ORF64; | RNA gene | |
| X | OSCG01010 | protein_id=CAA33940.1; | Coding gene | HOM007349 ORTHO015695 |
| X | OSCG01020 | tRNA-Leu (CAA); | RNA gene | |
| X | OSCG01030 | ndhB;NADH dehydrogenase ND2;protein_id=CAA33941.1; | Coding gene | HOM000482 ORTHO001792 |
| V | OSCG01040 | rps7;ribosomal protein S7;protein_id=CAA33942.1; | Coding gene | HOM000482 ORTHO000656 |
| X | OSCG01050 | protein_id=CAA33943.1; | Coding gene | HOM015970 ORTHO038564 |
| X | OSCG01060 | protein_id=CAA33944.1; | Coding gene | HOM015999 ORTHO038563 |
| X | OSCG01070 | tRNA-Val (GAC); | RNA gene | |
| X | OSCG01080 | RNA gene | ||
| X | OSCG01090 | tRNA-Ile (GAU); | RNA gene | |
| X | OSCG01100 | protein_id=CAA33945.1; | Coding gene | HOM008876 ORTHO017302 |
| X | OSCG01110 | tRNA-Ala (UGC); | RNA gene | |
| X | OSCG01120 | ORF109; ORF within trnA intron; | RNA gene | |
| X | OSCG01130 | RNA gene | ||
| X | OSCG01140 | RNA gene | ||
| X | OSCG01150 | RNA gene | ||
| X | OSCG01160 | RNA gene | ||
| X | OSCG01170 | protein_id=CAA33946.1; | Coding gene | singleton |
| X | OSCG01180 | tRNA-Asn (GUU); | RNA gene | |
| X | OSCG01190 | protein_id=CAA33947.1; | Coding gene | HOM009567 ORTHO025105 |
| V | OSCG01200 | rps15;ribosomal protein S15;protein_id=CAA33948.1; | Coding gene | HOM000775 ORTHO029775 |
| X | OSCG01210 | protein_id=CAA33949.1; | Coding gene | HOM000491 ORTHO091987 |
| X | OSCG01220 | ndhF;NADH dehydrogenase ND5;protein_id=CAA33950.1; | Coding gene | HOM001016 ORTHO003686 |
| V | OSCG01230 | protein_id=CAA33951.1; | Coding gene | HOM010628 ORTHO023492 |
| X | OSCG01240 | tRNA-Leu (UAG); | RNA gene | |
| X | OSCG01250 | protein_id=CAA33952.1; | Coding gene | HOM000431 ORTHO006162 |
| X | OSCG01260 | ndhD;NADH dehydrogenase ND4;protein_id=CAA33953.1; | Coding gene | HOM001599 ORTHO007550 |
| X | OSCG01270 | psaC;PSI 9kDa protein;protein_id=CAA33954.1; | Coding gene | HOM001197 ORTHO006163 |
| X | OSCG01280 | ndhE;NADH dehydrogenase ND4L;protein_id=CAA33955.1; | Coding gene | HOM001197 ORTHO008325 |
| X | OSCG01290 | ndhG;NADH dehydrogenase ND6;protein_id=CAA33908.1; | Coding gene | HOM001197 ORTHO008326 |
| X | OSCG01300 | 18kDa protein related to a subunit of NADH dehydroghenase;protein_id=CAA33909.1; | Coding gene | HOM000491 ORTHO096831 |
| X | OSCG01310 | ndhA;NADH dehydrogenase ND1;protein_id=CAA33910.1; | Coding gene | HOM000491 ORTHO002592 |
| X | OSCG01320 | NADH dehydrogenase 49kDa protein;protein_id=CAA33911.1; | Coding gene | HOM000491 ORTHO003254 |
| V | OSCG01330 | rps15;ribosomal protein S15;protein_id=CAA33912.1; | Coding gene | HOM000775 ORTHO029775 |
| X | OSCG01340 | protein_id=CAA33913.1; | Coding gene | HOM009567 ORTHO025105 |
| X | OSCG01350 | tRNA-Asn (GUU); | RNA gene | |
| X | OSCG01360 | protein_id=CAA33914.1; | Coding gene | singleton |
| X | OSCG01370 | tRNA-Arg (ACG); | RNA gene | |
| X | OSCG01380 | RNA gene | ||
| X | OSCG01390 | RNA gene | ||
| X | OSCG01400 | RNA gene | ||
| X | OSCG01410 | tRNA-Ala (UGC); | RNA gene | |
| X | OSCG01420 | ORF109; ORF within trnA intron; | RNA gene | |
| X | OSCG01430 | tRNA-Ile (GAU); | RNA gene | |
| X | OSCG01440 | protein_id=CAA33915.1; | Coding gene | HOM008876 ORTHO017302 |
| X | OSCG01450 | RNA gene | ||
| X | OSCG01460 | tRNA-Val (GAC); | RNA gene | |
| X | OSCG01470 | protein_id=CAA33916.1; | Coding gene | HOM015999 ORTHO038563 |
| X | OSCG01480 | protein_id=CAA33917.1; | Coding gene | HOM015970 ORTHO038564 |
| V | OSCG01490 | 3'rps12;ribosomal protein S12;protein_id=CAA33918.1; | Coding gene | HOM001029 ORTHO016409 |
| V | OSCG01500 | rps7;ribosomal protein S7;protein_id=CAA33919.1; | Coding gene | HOM000482 ORTHO000656 |
| X | OSCG01510 | ndhB;NADH dehydrogenase ND2;protein_id=CAA33920.1; | Coding gene | HOM000482 ORTHO001792 |
| X | OSCG01520 | tRNA-Leu (CAA); | RNA gene | |
| X | OSCG01530 | protein_id=CAA33921.1; | Coding gene | HOM007349 ORTHO015695 |
| X | OSCG01540 | ORF64; | RNA gene | |
| X | OSCG01550 | protein_id=CAA33922.1; | Coding gene | HOM031095 ORTHO070615 |
| X | OSCG01560 | tRNA-Ile (CAU); | RNA gene | |
| V | OSCG01570 | rpl23;ribosomal protein L23;protein_id=CAA33923.1; | Coding gene | HOM001724 ORTHO000441 |
| V | OSCG01580 | rpl2;ribosomal protein L2;protein_id=CAA33928.1; | Coding gene | HOM000770 ORTHO000561 |
| X | OSCG01590 | protein_id=CAA33925.1; | Coding gene | HOM004786 ORTHO009010 |
| V | OSCG01600 | protein_id=CAA33926.1; | Coding gene | HOM000770 ORTHO020744 |
| X | OSCG01610 | tRNA-His (GUG); | RNA gene | |
| V | OSCG01620 | rps19;ribosomal protein S19;protein_id=CAA33927.1; | Coding gene | HOM000739 ORTHO000923 |