Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_osa_3
Cluster type
GO
Species
Oryza sativa ssp. japonica
Chromosome
chloroplast
E-value
2.80621e-42
GO label
GO:0032991
GO description
macromolecular complex
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM00021136030225
HOM00021535626625
HOM00039523413125
HOM00046221020224
HOM00048220217223
HOM0005501827124
HOM00057517514323
HOM00061416517324
HOM00061916413223
HOM00073914617323
HOM00077014115425
HOM00077514010223
HOM0009611179123
HOM00102910917223
HOM00108110511123
HOM001436825222
HOM001724708220
HOM001874665125
HOM002419531123
HOM002716476119
HOM002742474119
HOM004406324119
HOM005581265119
HOM006202231113
HOM006468211118
HOM006756191119
HOM0106286115

Gene information

In cluster Gene id Description Gene type Gene family
V OSCG00010psbA;PSII 32kDa protein;protein_id=CAA34007.1;Coding geneHOM000961 ORTHO001130
X OSCG00020tRNA-Lys (UUU);RNA gene
X OSCG00030protein_id=CAA34008.1;Coding geneHOM000961 ORTHO007737
V OSCG00040rps16;ribosomal protein S16;protein_id=CAA34009.1;Coding geneHOM000395 ORTHO006335
X OSCG00050tRNA-Gln (UUG);RNA gene
X OSCG00060psbK;PSII K protein;protein_id=CAA34010.1;Coding geneHOM002716 ORTHO005608
V OSCG00070psbI;PSII I protein;protein_id=CAA34011.1;Coding geneHOM002716 ORTHO012703
X OSCG00080tRNA-Ser (GCU);RNA gene
X OSCG00090protein_id=CAA34012.1;Coding geneHOM014368 ORTHO029601
V OSCG00100psbD;PSII D2 protein;protein_id=CAA34013.1;Coding geneHOM000619 ORTHO002969
V OSCG00110psbC;PSII 43kDa protein;protein_id=CAA34014.1;Coding geneHOM000619 ORTHO002407
X OSCG00120tRNA-Ser (UGA);RNA gene
X OSCG00130protein_id=CAA34015.1;Coding geneHOM000619 ORTHO004311
X OSCG00140tRNA-Gly (GCC);RNA gene
X OSCG00150tRNA-Gly (GCC);RNA gene
X OSCG00160tRNA-fMet (CAU);RNA gene
X OSCG00170tRNA-Gly (UCC);RNA gene
X OSCG00180protein_id=CAA33982.1;Coding geneHOM012162 ORTHO025061
X OSCG00190protein_id=CAA33983.1;Coding geneHOM008363 ORTHO017303
X OSCG00200tRNA-Thr (GGU);RNA gene
X OSCG00210tRNA-Thr (GGU);RNA gene
X OSCG00220tRNA-Glu (UCC);RNA gene
X OSCG00230tRNA-Tyr (GUA);RNA gene
X OSCG00240tRNA-Asp (GUC);RNA gene
V OSCG00250psbM;PSII low MW protein;protein_id=CAA33984.1;Coding geneHOM000550 ORTHO013224
X OSCG00260protein_id=CAA33985.1;Coding geneHOM001026 ORTHO000110
X OSCG00270tRNA-Cys (GCA);RNA gene
X OSCG00280rpoB;RNA polymerase beta subunit;protein_id=CAA33986.1;Coding geneHOM000550 ORTHO001338
X OSCG00290rpoC1;RNA polymerase beta' subunit-1;protein_id=CAA33987.1;Coding geneHOM000550 ORTHO002151
X OSCG00300rpoC2;RNA polymerase beta' subunit-2;protein_id=CAA33988.1;Coding geneHOM001193 ORTHO001668
V OSCG00310rps2;ribosomal protein S2;protein_id=CAA33989.1;Coding geneHOM000215 ORTHO002665
V OSCG00320atpI;ATPase a subunit;protein_id=CAA33990.1;Coding geneHOM000215 ORTHO005607
V OSCG00330atpH;ATPase III subunit;protein_id=CAA33991.1;Coding geneHOM000215 ORTHO001974
V OSCG00340atpF;ATPase I subunit;protein_id=CAA33992.1;Coding geneHOM005581 ORTHO007020
V OSCG00350atpA;ATPase alpha subunit;protein_id=CAA33993.1;Coding geneHOM000215 ORTHO004312
X OSCG00360tRNA-Arg (UCU);RNA gene
X OSCG00370RNA gene
V OSCG00380rps14;ribosomal protein S14;protein_id=CAA33994.1;Coding geneHOM000575 ORTHO005606
V OSCG00390psaB;PSI P700 apoprotein A2;protein_id=CAA33995.1;Coding geneHOM000575 ORTHO001434
V OSCG00400psaA;PSI P700 apoprotein A1;protein_id=CAA33996.1;Coding geneHOM000575 ORTHO002664
X OSCG00410protein_id=CAA33997.1;Coding geneHOM002384 ORTHO006334
X OSCG00420tRNA-Ser (GGA);RNA gene
V OSCG00430protein_id=CAA33998.1;Coding geneHOM002742 ORTHO001806
X OSCG00440tRNA-Thr (UGU);RNA gene
X OSCG00450tRNA-Leu (UAA);RNA gene
X OSCG00460tRNA-Phe (GAA);RNA gene
X OSCG00470protein_id=CAA33999.1;Coding geneHOM000211 ORTHO002150
X OSCG00480protein_id=CAA34000.1;Coding geneHOM000211 ORTHO005609
X OSCG00490protein_id=CAA34001.1;Coding geneHOM000211 ORTHO007019
X OSCG00500tRNA-Val (UAC);RNA gene
X OSCG00510tRNA-Met (CAU);RNA gene
V OSCG00520protein_id=CAA34002.1;Coding geneHOM000211 ORTHO007549
V OSCG00530protein_id=CAA34003.1;Coding geneHOM000211 ORTHO001337
X OSCG00540protein_id=CAA34004.1;Coding geneHOM000775 ORTHO001077
X OSCG00550protein_id=CAA34005.1;Coding genesingleton
X OSCG00560protein_id=CAA34006.1;Coding geneHOM017448 ORTHO038768
X OSCG00570protein_id=CAA33956.1;Coding geneHOM013174 ORTHO021138
V OSCG00580protein_id=CAA33957.1;Coding geneHOM002419 ORTHO005610
X OSCG00590protein_id=CAA33958.1;Coding geneHOM003137 ORTHO002663
X OSCG00600protein_id=CAA33959.1;Coding genesingleton
X OSCG00610protein_id=CAA33960.1;Coding geneHOM001150 ORTHO009935
X OSCG00620petA;cytochrome f;protein_id=CAA33961.1;Coding geneHOM001150 ORTHO002149
V OSCG00630protein_id=CAA33962.1;Coding geneHOM006202 ORTHO199487
V OSCG00640psbL;PSII L protein;protein_id=CAA33963.1;Coding geneHOM001436 ORTHO006120
V OSCG00650psbF;PSII cytochrome b559;protein_id=CAA33964.1;Coding geneHOM006756 ORTHO010425
V OSCG00660psbE;PSII cytochrome b559;protein_id=CAA33965.1;Coding geneHOM001436 ORTHO001236
X OSCG00670protein_id=CAA33966.1;Coding genesingleton
X OSCG00680petE;cytochrome b /f complex subunit 5;protein_id=CAA33967.1;Coding geneHOM006438 ORTHO010426
X OSCG00690tRNA-Trp (CCA);RNA gene
X OSCG00700tRNA-Pro (UGG);RNA gene
V OSCG00710protein_id=CAA33968.1;Coding geneHOM000215 ORTHO013725
V OSCG00720rpl33;ribosomal protein L33;protein_id=CAA33969.1;Coding geneHOM000215 ORTHO002968
V OSCG00730rps18;ribosomal protein S18;protein_id=CAA33970.1;Coding geneHOM004406 ORTHO004310
V OSCG00740rpl20;ribosomal protein L20;protein_id=CAA33971.1;Coding geneHOM001874 ORTHO009220
V OSCG00750rps12;ribosomal protein S12;protein_id=CAA33929.1;Coding geneHOM001029 ORTHO011655
X OSCG00760protein_id=CAA33972.1;Coding geneHOM000202 ORTHO007021
V OSCG00770psbB;PSII 47kDa protein;protein_id=CAA33973.1;Coding geneHOM000462 ORTHO002967
V OSCG00780protein_id=CAA33974.1;Coding genesingleton
V OSCG00790psbN;PSII low MW protein;protein_id=CAA33975.1;Coding geneHOM006468 ORTHO012655
V OSCG00800psbH;PSII 10kDa phosphoprotein;protein_id=CAA33976.1;Coding geneHOM000462 ORTHO002966
X OSCG00810petB;cytochrome B6;protein_id=CAA33977.1;Coding geneHOM000462 ORTHO004309
X OSCG00820petD;cytochrome b/f;protein_id=CAA33978.1;Coding geneHOM000462 ORTHO002965
X OSCG00830rpoA;RNA polymerase alpha subunit;protein_id=CAA33979.1;Coding geneHOM001081 ORTHO001805
V OSCG00840rps11;ribosomal protein S11;protein_id=CAA33980.1;Coding geneHOM001081 ORTHO014576
V OSCG00850rpl36;ribosomal protein L36;protein_id=CAA33981.1;Coding genesingleton
X OSCG00860infA;initiation factor 1;protein_id=CAA33930.1;Coding geneHOM004268 ORTHO002804
V OSCG00870rps8;ribosomal protein S8;protein_id=CAA33931.1;Coding geneHOM000614 ORTHO003780
V OSCG00880rpl14;ribosomal protein L14;protein_id=CAA33932.1;Coding geneHOM000614 ORTHO002148
V OSCG00890rpl16;ribosomal protein L16;protein_id=CAA33933.1;Coding geneHOM000614 ORTHO001799
V OSCG00900rps3;ribosomal protein S3;protein_id=CAA33934.1;Coding geneHOM000739 ORTHO001954
V OSCG00910rpl22;ribosomal protein L22;protein_id=CAA33935.1;Coding geneHOM000739 ORTHO004308
X OSCG00920RNA gene
V OSCG00930protein_id=CAA33936.1;Coding geneHOM000770 ORTHO020744
X OSCG00940tRNA-His (GUG);RNA gene
V OSCG00950rp12;ribosomal protein L2;protein_id=CAA33924.1;Coding geneHOM000770 ORTHO000561
X OSCG00960protein_id=CAA33937.1;Coding geneHOM004786 ORTHO009010
V OSCG00970rpl23;ribosomal protein L23;protein_id=CAA33938.1;Coding geneHOM001724 ORTHO000441
X OSCG00980tRNA-Ile (CAU);RNA gene
X OSCG00990protein_id=CAA33939.1;Coding geneHOM031095 ORTHO070615
X OSCG01000ORF64;RNA gene
X OSCG01010protein_id=CAA33940.1;Coding geneHOM007349 ORTHO015695
X OSCG01020tRNA-Leu (CAA);RNA gene
X OSCG01030ndhB;NADH dehydrogenase ND2;protein_id=CAA33941.1;Coding geneHOM000482 ORTHO001792
V OSCG01040rps7;ribosomal protein S7;protein_id=CAA33942.1;Coding geneHOM000482 ORTHO000656
X OSCG01050protein_id=CAA33943.1;Coding geneHOM015970 ORTHO038564
X OSCG01060protein_id=CAA33944.1;Coding geneHOM015999 ORTHO038563
X OSCG01070tRNA-Val (GAC);RNA gene
X OSCG01080RNA gene
X OSCG01090tRNA-Ile (GAU);RNA gene
X OSCG01100protein_id=CAA33945.1;Coding geneHOM008876 ORTHO017302
X OSCG01110tRNA-Ala (UGC);RNA gene
X OSCG01120ORF109; ORF within trnA intron;RNA gene
X OSCG01130RNA gene
X OSCG01140RNA gene
X OSCG01150RNA gene
X OSCG01160RNA gene
X OSCG01170protein_id=CAA33946.1;Coding genesingleton
X OSCG01180tRNA-Asn (GUU);RNA gene
X OSCG01190protein_id=CAA33947.1;Coding geneHOM009567 ORTHO025105
V OSCG01200rps15;ribosomal protein S15;protein_id=CAA33948.1;Coding geneHOM000775 ORTHO029775
X OSCG01210protein_id=CAA33949.1;Coding geneHOM000491 ORTHO091987
X OSCG01220ndhF;NADH dehydrogenase ND5;protein_id=CAA33950.1;Coding geneHOM001016 ORTHO003686
V OSCG01230protein_id=CAA33951.1;Coding geneHOM010628 ORTHO023492
X OSCG01240tRNA-Leu (UAG);RNA gene
X OSCG01250protein_id=CAA33952.1;Coding geneHOM000431 ORTHO006162
X OSCG01260ndhD;NADH dehydrogenase ND4;protein_id=CAA33953.1;Coding geneHOM001599 ORTHO007550
X OSCG01270psaC;PSI 9kDa protein;protein_id=CAA33954.1;Coding geneHOM001197 ORTHO006163
X OSCG01280ndhE;NADH dehydrogenase ND4L;protein_id=CAA33955.1;Coding geneHOM001197 ORTHO008325
X OSCG01290ndhG;NADH dehydrogenase ND6;protein_id=CAA33908.1;Coding geneHOM001197 ORTHO008326
X OSCG0130018kDa protein related to a subunit of NADH dehydroghenase;protein_id=CAA33909.1;Coding geneHOM000491 ORTHO096831
X OSCG01310ndhA;NADH dehydrogenase ND1;protein_id=CAA33910.1;Coding geneHOM000491 ORTHO002592
X OSCG01320NADH dehydrogenase 49kDa protein;protein_id=CAA33911.1;Coding geneHOM000491 ORTHO003254
V OSCG01330rps15;ribosomal protein S15;protein_id=CAA33912.1;Coding geneHOM000775 ORTHO029775
X OSCG01340protein_id=CAA33913.1;Coding geneHOM009567 ORTHO025105
X OSCG01350tRNA-Asn (GUU);RNA gene
X OSCG01360protein_id=CAA33914.1;Coding genesingleton
X OSCG01370tRNA-Arg (ACG);RNA gene
X OSCG01380RNA gene
X OSCG01390RNA gene
X OSCG01400RNA gene
X OSCG01410tRNA-Ala (UGC);RNA gene
X OSCG01420ORF109; ORF within trnA intron;RNA gene
X OSCG01430tRNA-Ile (GAU);RNA gene
X OSCG01440protein_id=CAA33915.1;Coding geneHOM008876 ORTHO017302
X OSCG01450RNA gene
X OSCG01460tRNA-Val (GAC);RNA gene
X OSCG01470protein_id=CAA33916.1;Coding geneHOM015999 ORTHO038563
X OSCG01480protein_id=CAA33917.1;Coding geneHOM015970 ORTHO038564
V OSCG014903'rps12;ribosomal protein S12;protein_id=CAA33918.1;Coding geneHOM001029 ORTHO016409
V OSCG01500rps7;ribosomal protein S7;protein_id=CAA33919.1;Coding geneHOM000482 ORTHO000656
X OSCG01510ndhB;NADH dehydrogenase ND2;protein_id=CAA33920.1;Coding geneHOM000482 ORTHO001792
X OSCG01520tRNA-Leu (CAA);RNA gene
X OSCG01530protein_id=CAA33921.1;Coding geneHOM007349 ORTHO015695
X OSCG01540ORF64;RNA gene
X OSCG01550protein_id=CAA33922.1;Coding geneHOM031095 ORTHO070615
X OSCG01560tRNA-Ile (CAU);RNA gene
V OSCG01570rpl23;ribosomal protein L23;protein_id=CAA33923.1;Coding geneHOM001724 ORTHO000441
V OSCG01580rpl2;ribosomal protein L2;protein_id=CAA33928.1;Coding geneHOM000770 ORTHO000561
X OSCG01590protein_id=CAA33925.1;Coding geneHOM004786 ORTHO009010
V OSCG01600protein_id=CAA33926.1;Coding geneHOM000770 ORTHO020744
X OSCG01610tRNA-His (GUG);RNA gene
V OSCG01620rps19;ribosomal protein S19;protein_id=CAA33927.1;Coding geneHOM000739 ORTHO000923