Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_bdi_1
Cluster type
GO
Species
Brachypodium distachyon
Chromosome
chloroplast
E-value
5.49189e-33
GO label
GO:0032991
GO description
macromolecular complex
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM00021136024225
HOM00021535614525
HOM0003952348125
HOM00046221014224
HOM00048220210223
HOM0005501823124
HOM0005751757323
HOM0006141659324
HOM0006191646223
HOM0007391469423
HOM0007701415225
HOM0007751408223
HOM0009611176123
HOM0010291091123
HOM0010811053123
HOM001436828222
HOM001724708220
HOM001874663125
HOM002419531123
HOM002716472119
HOM002742472119
HOM004406323119
HOM005581263119
HOM006202235113
HOM006468211118
HOM006756191119
HOM0106286115

Gene information

In cluster Gene id Description Gene type Gene family
V BDCG00020psbA;PSII 32kDa protein;protein_id=ACF08621.1;Coding geneHOM000961 ORTHO001130
X BDCG00030trnK;tRNA-Lys;RNA gene
X BDCG00040matK;maturase;protein_id=ACF08622.1;Coding geneHOM000961 ORTHO007737
V BDCG00050rps16;ribosomal protein S16;protein_id=ACF08623.1;Coding geneHOM000395 ORTHO006335
X BDCG00060trnQ;tRNA-Gln;RNA gene
X BDCG00070psbK;PSII K protein;protein_id=ACF08624.1;Coding geneHOM002716 ORTHO005608
V BDCG00080psbI;PSII I protein;protein_id=ACF08625.1;Coding geneHOM002716 ORTHO012703
X BDCG00090trnS;tRNA-Ser;RNA gene
V BDCG00100psbD;PSII D2 protein;protein_id=ACF08626.1;Coding geneHOM000619 ORTHO002969
V BDCG00110psbC;PSII 43kDa protein;protein_id=ACF08627.1;Coding geneHOM000619 ORTHO002407
X BDCG00120trnS;tRNA-Ser;RNA gene
X BDCG00130ycf9;Ycf9;protein_id=ACF08628.1;Coding geneHOM000619 ORTHO004311
X BDCG00140trnG;tRNA-Gly;RNA gene
X BDCG00150trnfM;tRNA-Met;RNA gene
X BDCG00160trnG;tRNA-Gly;RNA gene
X BDCG00170trnT;tRNA-Thr;RNA gene
X BDCG00180trnE;tRNA-Glu;RNA gene
X BDCG00190trnY;tRNA-Tyr;RNA gene
X BDCG00200trnD;tRNA-Asp;RNA gene
V BDCG00210psbM;PSII low MW protein;protein_id=ACF08629.1;Coding geneHOM000550 ORTHO013224
X BDCG00220ycf6;Ycf6;protein_id=ACF08630.1;Coding geneHOM001026 ORTHO000110
X BDCG00230trnC;tRNA-Cys;RNA gene
X BDCG00240rpoB;RNA polymerase beta subunit;protein_id=ACF08631.1;Coding geneHOM000550 ORTHO001338
X BDCG00250rpoC1;RNA polymerase beta' subunit-1;protein_id=ACF08632.1;Coding geneHOM000550 ORTHO002151
V BDCG00260rps2;ribosomal protein S2;protein_id=ACF08633.1;Coding geneHOM000215 ORTHO002665
V BDCG00270atpI;ATPase a subunit;protein_id=ACF08634.1;Coding geneHOM000215 ORTHO005607
V BDCG00280atpH;ATPase III subunit;protein_id=ACF08635.1;Coding geneHOM000215 ORTHO001974
V BDCG00290atpF;ATPase I subunit;protein_id=ACF08636.1;Coding geneHOM005581 ORTHO007020
V BDCG00300atpA;ATPase alpha subunit;protein_id=ACF08637.1;Coding geneHOM000215 ORTHO004312
X BDCG00310trnR;tRNA-Arg;RNA gene
V BDCG00320rps14;ribosomal protein S14;protein_id=ACF08638.1;Coding geneHOM000575 ORTHO005606
V BDCG00330psaB;PSI p700 apoprotein A2;protein_id=ACF08639.1;Coding geneHOM000575 ORTHO001434
V BDCG00340psaA;PsaA;protein_id=ACF08640.1;Coding geneHOM000575 ORTHO002664
X BDCG00350ycf3;Ycf3;protein_id=ACF08641.1;Coding geneHOM002384 ORTHO006334
X BDCG00360trnS;tRNA-Ser;RNA gene
V BDCG00370rps4;ribosomal protein S4;protein_id=ACF08642.1;Coding geneHOM002742 ORTHO001806
X BDCG00380trnT;tRNA-Thr;RNA gene
X BDCG00390trnL;tRNA-Leu;RNA gene
X BDCG00400trnF;tRNA-Phe;RNA gene
X BDCG00410ndhJ;NADH dehydrogenase 30kDa subunit;protein_id=ACF08643.1;Coding geneHOM000211 ORTHO002150
X BDCG00420ndhK;NADH dehydrogenase 27kDa subunit;protein_id=ACF08644.1;Coding geneHOM000211 ORTHO005609
X BDCG00430ndhC;NADH dehydrogenase subunit 3;protein_id=ACF08645.1;Coding geneHOM000211 ORTHO007019
X BDCG00440trnV;tRNA-Val;RNA gene
X BDCG00450trnM;tRNA-Met;RNA gene
V BDCG00460atpE;ATPase epsilon subunit;protein_id=ACF08646.1;Coding geneHOM000211 ORTHO007549
V BDCG00470atpB;ATPase beta subunit;protein_id=ACF08647.1;Coding geneHOM000211 ORTHO001337
X BDCG00480rbcL;ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit;protein_id=ACF08648.1;Coding geneHOM000775 ORTHO001077
V BDCG00490psaI;PSI small peptide;protein_id=ACF08649.1;Coding geneHOM002419 ORTHO005610
X BDCG00500ycf4;Ycf4;protein_id=ACF08650.1;Coding geneHOM003137 ORTHO002663
X BDCG00510cemA;envelope membrane protein;protein_id=ACF08651.1;Coding geneHOM001150 ORTHO009935
X BDCG00520petA;cytochrome f;protein_id=ACF08652.1;Coding geneHOM001150 ORTHO002149
V BDCG00530psbJ;PSII J protein;protein_id=ACF08653.1;Coding geneHOM006202 ORTHO213147
V BDCG00540psbL;PSII L protein;protein_id=ACF08654.1;Coding geneHOM001436 ORTHO006120
V BDCG00550psbF;PSII cytochrome b559 4kDa subunit;protein_id=ACF08655.1;Coding geneHOM006756 ORTHO010425
V BDCG00560psbE;PSII cytochrome b559 8kDa subunit;protein_id=ACF08656.1;Coding geneHOM001436 ORTHO001236
X BDCG00570petL;cytochrome b/f complex 3.5kD subunit;protein_id=ACF08657.1;Coding genesingleton
X BDCG00580petG;cytochrome b/f complex subunit 5;protein_id=ACF08658.1;Coding geneHOM006438 ORTHO010426
X BDCG00590trnW;tRNA-Trp;RNA gene
X BDCG00600trnP;tRNA-Pro;RNA gene
V BDCG00610rpl33;ribosomal protein L33;protein_id=ACF08659.1;Coding geneHOM000215 ORTHO002968
V BDCG00620rps18;ribosomal protein S18;protein_id=ACF08660.1;Coding geneHOM004406 ORTHO004310
V BDCG00630rpl20;ribosomal protein L20;protein_id=ACF08661.1;Coding geneHOM001874 ORTHO009220
V BDCG00010rps12;ribosomal protein S12;protein_id=ACF08620.1;Coding geneHOM001029 ORTHO011655
X BDCG00640clpP;ATP-dependent protease proteolytic subunit;protein_id=ACF08662.1;Coding geneHOM000202 ORTHO007021
V BDCG00650psbB;PSII 47kDa protein;protein_id=ACF08663.1;Coding geneHOM000462 ORTHO002967
V BDCG00660psbT;PSII T protein;protein_id=ACF08664.1;Coding genesingleton
V BDCG00670psbN;PSII N protein;protein_id=ACF08665.1;Coding geneHOM006468 ORTHO012655
V BDCG00680psbH;PSII 10kDa phosphoprotein;protein_id=ACF08666.1;Coding geneHOM000462 ORTHO002966
X BDCG00690petB;cytochrome b6;protein_id=ACF08667.1;Coding geneHOM000462 ORTHO004309
X BDCG00700petD;cytochrome b/f complex subunit 4;protein_id=ACF08668.1;Coding geneHOM000462 ORTHO002965
X BDCG00710rpoA;RNA polymerase alpha subunit;protein_id=ACF08669.1;Coding geneHOM001081 ORTHO001805
V BDCG00720rps11;ribosomal protein S11;protein_id=ACF08670.1;Coding geneHOM001081 ORTHO002662
V BDCG00730rpl36;ribosomal protein L36;protein_id=ACF08671.1;Coding genesingleton
X BDCG00740infA;initiation factor 1;protein_id=ACF08672.1;Coding geneHOM004268 ORTHO002804
V BDCG00750rps8;ribosomal protein S8;protein_id=ACF08673.1;Coding geneHOM000614 ORTHO003780
V BDCG00760rpl14;ribosomal protein L14;protein_id=ACF08674.1;Coding geneHOM000614 ORTHO002148
V BDCG00770rpl16;ribosomal protein L16;protein_id=ACF08675.1;Coding geneHOM000614 ORTHO001799
V BDCG00780rps3;ribosomal protein S3;protein_id=ACF08676.1;Coding geneHOM000739 ORTHO001954
V BDCG00790rpl22;ribosomal protein L22;protein_id=ACF08677.1;Coding geneHOM000739 ORTHO004308
V BDCG00800rps19;ribosomal protein S19;protein_id=ACF08678.1;Coding geneHOM000739 ORTHO000923
X BDCG00810trnH;tRNA-His;RNA gene
V BDCG00820rpl2;ribosomal protein L2;protein_id=ACF08679.1;Coding geneHOM000770 ORTHO000561
V BDCG00830rpl23;ribosomal protein L23;protein_id=ACF08680.1;Coding geneHOM001724 ORTHO000441
X BDCG00840trnI;tRNA-Ile;RNA gene
X BDCG00850trnL;tRNA-Leu;RNA gene
X BDCG00860ndhB;NADH dehydrogenase subunit 2;protein_id=ACF08681.1;Coding geneHOM000482 ORTHO001792
V BDCG00870rps7;ribosomal protein S7;protein_id=ACF08682.1;Coding geneHOM000482 ORTHO000656
X BDCG00880trnV;tRNA-Val;RNA gene
X BDCG0089016S ribosomal RNA;RNA gene
X BDCG00900trnI;tRNA-Ile;RNA gene
X BDCG00910trnA;tRNA-Ala;RNA gene
X BDCG0092023S ribosomal RNA;RNA gene
X BDCG009304.5S ribosomal RNA;RNA gene
X BDCG009405S ribosomal RNA;RNA gene
X BDCG00950trnR;tRNA-Arg;RNA gene
X BDCG00960trnN;tRNA-Asn;RNA gene
V BDCG00970rps15;ribosomal protein S15;protein_id=ACF08683.1;Coding geneHOM000775 ORTHO002094
X BDCG00980ndhF;NADH dehydrogenase subunit 5;protein_id=ACF08684.1;Coding geneHOM001016 ORTHO003686
V BDCG00990rpl32;ribosomal protein L32;protein_id=ACF08685.1;Coding geneHOM010628 ORTHO023492
X BDCG01000trnL;tRNA-Leu;RNA gene
X BDCG01010ycf5;Ycf5;protein_id=ACF08686.1;Coding geneHOM000431 ORTHO006162
X BDCG01020ndhD;NADH dehydrogenase subunit 4;protein_id=ACF08687.1;Coding geneHOM001599 ORTHO007550
X BDCG01030psaC;PSI 9kDa protein;protein_id=ACF08688.1;Coding geneHOM001197 ORTHO006163
X BDCG01040ndhE;NADH dehydrogenase subunit 4L;protein_id=ACF08689.1;Coding geneHOM001197 ORTHO008325
X BDCG01050ndhG;NADH dehydrogenase subunit 6;protein_id=ACF08690.1;Coding geneHOM001197 ORTHO008326
X BDCG01060ndhI;NADH dehydrogenase 18kDa subunit;protein_id=ACF08691.1;Coding geneHOM000491 ORTHO010535
X BDCG01070ndhA;NADH dehydrogenase subunit 1;protein_id=ACF08692.1;Coding geneHOM000491 ORTHO002592
X BDCG01080ndhH;NADH dehydrogenase 49kDa subunit;protein_id=ACF08693.1;Coding geneHOM000491 ORTHO003254
V BDCG01090rps15;ribosomal protein S15;protein_id=ACF08694.1;Coding geneHOM000775 ORTHO002094
X BDCG01100trnN;tRNA-Asn;RNA gene
X BDCG01110trnR;tRNA-Arg;RNA gene
X BDCG011205S ribosomal RNA;RNA gene
X BDCG011304.5S ribosomal RNA;RNA gene
X BDCG0114023S ribosomal RNA;RNA gene
X BDCG01150trnA;tRNA-Ala;RNA gene
X BDCG01160trnI;tRNA-Ile;RNA gene
X BDCG0117016S ribosomal RNA;RNA gene
X BDCG01180trnV;tRNA-Val;RNA gene
V BDCG01190rps7;ribosomal protein S7;protein_id=ACF08695.1;Coding geneHOM000482 ORTHO000656
X BDCG01200ndhB;NADH dehydrogenase subunit 2;protein_id=ACF08696.1;Coding geneHOM000482 ORTHO001792
X BDCG01210trnL;tRNA-Leu;RNA gene
X BDCG01220trnI;tRNA-Ile;RNA gene
V BDCG01230rpl23;ribosomal protein L23;protein_id=ACF08697.1;Coding geneHOM001724 ORTHO000441
V BDCG01240rpl2;ribosomal protein L2;protein_id=ACF08698.1;Coding geneHOM000770 ORTHO000561
X BDCG01250trnH;tRNA-His;RNA gene
V BDCG01260rps19;ribosomal protein S19;protein_id=ACF08699.1;Coding geneHOM000739 ORTHO000923