Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_ath_54
Cluster type
GO
Species
Arabidopsis thaliana
Chromosome
3
E-value
0.00000769909
GO label
GO:0006468
GO description
protein amino acid phosphorylation
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM0000063414116120
HOM000017190694922
HOM000019178473125
HOM000041127954624
HOM000043125662425
HOM00007685136125

Gene information

In cluster Gene id Description Gene type Gene family
V AT3G45330Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, cauline leaf, root, cultured cell; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G60320.1); Has 104796 Blast hits to 103734 proteins in 4016 species: Archae - 85; Bacteria - 13247; Metazoa - 37072; Fungi - 7935; Plants - 32188; Viruses - 331; Other Eukaryotes - 13938 (source: NCBI BLink).;Concanavalin A-like lectin protein kinase family proteinCoding geneHOM000041 ORTHO009422
X AT3G45340Mutator-like transposase family, has a 3.3e-47 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);rna_type=other_rna;transposable element geneTransposon
X AT3G45350similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14330.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994);rna_type=other_rna;transposable element geneTransposon
X AT3G45360similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04394.1);rna_type=other_rna;transposable element geneTransposon
X AT3G45370similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14340.1);rna_type=other_rna;transposable element geneTransposon
X AT3G45380similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04400.1); similar to P. falciparum RESA-like protein with DnaJ domain [Plasmodium falciparum 3D7] (GB:NP_703336.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048);rna_type=other_rna;transposable element geneTransposon
V AT3G45390Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G45330.1); Has 32581 Blast hits to 20319 proteins in 446 species: Archae - 0; Bacteria - 89; Metazoa - 475; Fungi - 62; Plants - 31859; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).;Concanavalin A-like lectin protein kinase family proteinCoding geneHOM000041 ORTHO121639
X AT3G45400exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT3G03650.1); Has 1358 Blast hits to 1353 proteins in 108 species: Archae - 0; Bacteria - 4; Metazoa - 218; Fungi - 4; Plants - 1054; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).;exostosin family proteinCoding geneHOM000569 ORTHO003485
V AT3G45410encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor.;Concanavalin A-like lectin protein kinase family proteinCoding geneHOM000041 ORTHO009422
V AT3G45420Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G45410.1); Has 119428 Blast hits to 117955 proteins in 4409 species: Archae - 94; Bacteria - 14054; Metazoa - 43305; Fungi - 10245; Plants - 34245; Viruses - 408; Other Eukaryotes - 17077 (source: NCBI BLink).;Concanavalin A-like lectin protein kinase family proteinCoding geneHOM000041 ORTHO009422
V AT3G45430Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G60300.2); Has 112094 Blast hits to 110783 proteins in 4027 species: Archae - 87; Bacteria - 13033; Metazoa - 40575; Fungi - 9357; Plants - 32839; Viruses - 371; Other Eukaryotes - 15832 (source: NCBI BLink).;Concanavalin A-like lectin protein kinase family proteinCoding geneHOM000041 ORTHO009422
V AT3G45440Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT5G60320.1); Has 111175 Blast hits to 109934 proteins in 4169 species: Archae - 90; Bacteria - 12913; Metazoa - 40130; Fungi - 9355; Plants - 32817; Viruses - 349; Other Eukaryotes - 15521 (source: NCBI BLink).;Concanavalin A-like lectin protein kinase family proteinCoding geneHOM000041 ORTHO009422
X AT3G45443unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM022004 ORTHO044411
X AT3G45446gypsy-like retrotransposon family, has a 8.8e-37 P-value blast match to GB:AAD22153 polyprotein (Gypsy_Ty3-element) (Sorghum bicolor);rna_type=other_rna;transposable element geneTransposon
X AT3G45450Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: protein metabolic process; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 16633 Blast hits to 16323 proteins in 2747 species: Archae - 17; Bacteria - 12492; Metazoa - 5; Fungi - 273; Plants - 382; Viruses - 4; Other Eukaryotes - 3460 (source: NCBI BLink).;Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily proteinCoding geneHOM000309 ORTHO229362
X AT3G45460IBR domain containing protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45480.1); Has 1686 Blast hits to 1674 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 656; Fungi - 285; Plants - 509; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).;IBR domain containing proteinCoding geneHOM000287 ORTHO044412
X AT3G45470IBR domain containing protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25360.1); Has 2895 Blast hits to 2887 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 1211; Fungi - 626; Plants - 637; Viruses - 2; Other Eukaryotes - 419 (source: NCBI BLink).;IBR domain containing proteinCoding geneHOM000287 ORTHO180257
X AT3G45480RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: IBR domain containing protein (TAIR:AT3G45460.1); Has 2300 Blast hits to 2269 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 900; Fungi - 395; Plants - 659; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).;RING/U-box protein with C6HC-type zinc fingerCoding geneHOM000287 ORTHO044413
X AT3G45490BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 99 Blast hits to 96 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM000287 ORTHO254828
X AT3G45500BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 48 Blast hits to 46 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM013004 ORTHO044414
X AT3G45510RING/U-box protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45480.1); Has 1545 Blast hits to 1533 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 198; Plants - 547; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).;RING/U-box proteinCoding geneHOM000287 ORTHO181009
X AT3G45520copia-like retrotransposon family, has a 1.0e-308 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana);rna_type=other_rna;transposable element geneTransposon
X AT3G45525BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45480.1); Has 31 Blast hits to 29 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM013004 ORTHO183852
X AT3G45530Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G27473.1); Has 1872 Blast hits to 663 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1850; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;Cysteine/Histidine-rich C1 domain family proteinCoding geneHOM000182 ORTHO000029
X AT3G45540RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2900 Blast hits to 2879 proteins in 213 species: Archae - 0; Bacteria - 2; Metazoa - 1213; Fungi - 549; Plants - 696; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).;RING/U-box protein with C6HC-type zinc fingerCoding geneHOM000287 ORTHO044415
X AT3G45550non-LTR retrotransposon family (LINE), has a 8.1e-36 P-value blast match to GB:AAA39398 ORF2 (Mus musculus) (LINE-element);rna_type=other_rna;transposable element geneTransposon
X AT3G45555RING/U-box protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2546 Blast hits to 2530 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 1126; Fungi - 452; Plants - 617; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink).;RING/U-box proteinCoding geneHOM000287 ORTHO044416
X AT3G45560zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 537 Blast hits to 473 proteins in 76 species: Archae - 0; Bacteria - 6; Metazoa - 55; Fungi - 41; Plants - 391; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).;zinc finger (C3HC4-type RING finger) family proteinCoding geneHOM000287 ORTHO162717
X AT3G45570RING/U-box protein with C6HC-type zinc finger domain; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 1459 Blast hits to 1449 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 538; Fungi - 228; Plants - 505; Viruses - 2; Other Eukaryotes - 186 (source: NCBI BLink).;RING/U-box protein with C6HC-type zinc finger domainCoding geneHOM000287 ORTHO021204
X AT3G45577tRNA-intron endonucleases; FUNCTIONS IN: tRNA-intron endonuclease activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, N-terminal (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: splicing endonuclease 1 (TAIR:AT3G45590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;tRNA-intron endonucleasesCoding geneHOM000873 ORTHO178628
X AT3G45580RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger domain (TAIR:AT3G45570.1); Has 2926 Blast hits to 2906 proteins in 216 species: Archae - 0; Bacteria - 2; Metazoa - 1215; Fungi - 592; Plants - 693; Viruses - 1; Other Eukaryotes - 423 (source: NCBI BLink).;RING/U-box protein with C6HC-type zinc fingerCoding geneHOM000287 ORTHO021204
X AT3G45590Encodes a catalytic subunit of tRNA splicing endonuclease.;splicing endonuclease 1Coding geneHOM000873 ORTHO003219
X AT3G45600Member of TETRASPANIN family;tetraspanin3Coding geneHOM000324 ORTHO007963
X AT3G45610Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1099 Blast hits to 1094 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1090; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).;Dof-type zinc finger DNA-binding family proteinCoding geneHOM000099 ORTHO044417
X AT3G45620This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase;Transducin/WD40 repeat-like superfamily proteinCoding geneHOM002081 ORTHO011981
X AT3G45630RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1); Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0; Bacteria - 612; Metazoa - 421; Fungi - 369; Plants - 161; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink).;RNA binding (RRM/RBD/RNP motifs) family proteinCoding geneHOM002216 ORTHO000949
X AT3G45638Unknown gene;rna_type=other_rna;other RNARNA gene
V AT3G45640Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers.Also functions in ovule development. Heterozygous MPK3 mutants in a homozygous MPK6 background are female sterile due to defects in integument development. MPK3 can be dephosphorylated by MKP2 in vitro.;mitogen-activated protein kinase 3Coding geneHOM000019 ORTHO010131
X AT3G45650Encodes a nitrate efflux transporter NAXT1 (for NITRATE EXCRETION TRANSPORTER1). Localized to the plasma membrane. NAXT1 belongs to a subclass of seven NAXT members from the large NITRATE TRANSPORTER1/PEPTIDE TRANSPORTER family and is mainly expressed in the cortex of mature roots.;nitrate excretion transporter1Coding geneHOM000031 ORTHO001584
X AT3G45660Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate excretion transporter1 (TAIR:AT3G45650.1); Has 4308 Blast hits to 4237 proteins in 696 species: Archae - 0; Bacteria - 1162; Metazoa - 465; Fungi - 314; Plants - 2110; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).;Major facilitator superfamily proteinCoding geneHOM000031 ORTHO001584
V AT3G45670Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G46140.1); Has 108714 Blast hits to 107857 proteins in 4121 species: Archae - 114; Bacteria - 12788; Metazoa - 39362; Fungi - 10563; Plants - 28299; Viruses - 463; Other Eukaryotes - 17125 (source: NCBI BLink).;Protein kinase superfamily proteinCoding geneHOM000043 ORTHO018840
X AT3G45673unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
X AT3G45680Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G45710.1); Has 3869 Blast hits to 3768 proteins in 536 species: Archae - 0; Bacteria - 851; Metazoa - 459; Fungi - 223; Plants - 2137; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).;Major facilitator superfamily proteinCoding geneHOM000031 ORTHO001584
X AT3G45690Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G45680.1); Has 4047 Blast hits to 3993 proteins in 551 species: Archae - 0; Bacteria - 1139; Metazoa - 429; Fungi - 192; Plants - 2074; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).;Major facilitator superfamily proteinCoding geneHOM000031 ORTHO001584
X AT3G45700Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G45710.1); Has 3331 Blast hits to 3241 proteins in 427 species: Archae - 0; Bacteria - 506; Metazoa - 449; Fungi - 129; Plants - 2109; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).;Major facilitator superfamily proteinCoding geneHOM000031 ORTHO001584
X AT3G45710Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G45700.1); Has 3682 Blast hits to 3580 proteins in 536 species: Archae - 2; Bacteria - 690; Metazoa - 461; Fungi - 187; Plants - 2116; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).;Major facilitator superfamily proteinCoding geneHOM000031 ORTHO001584
X AT3G45720Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G45680.1); Has 4336 Blast hits to 4242 proteins in 649 species: Archae - 2; Bacteria - 1337; Metazoa - 453; Fungi - 208; Plants - 2079; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).;Major facilitator superfamily proteinCoding geneHOM000031 ORTHO001584
X AT3G45730unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding genesingleton
X AT3G45740hydrolase family protein / HAD-superfamily protein; FUNCTIONS IN: copper ion binding, zinc ion binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIA, CECR5 (InterPro:IPR006353), HAD-superfamily hydrolase, subfamily IIA (InterPro:IPR006357); Has 548 Blast hits to 526 proteins in 159 species: Archae - 8; Bacteria - 6; Metazoa - 128; Fungi - 307; Plants - 36; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).;hydrolase family protein / HAD-superfamily proteinCoding geneHOM004434 ORTHO003660
X AT3G45750Nucleotidyltransferase family protein; BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT3G45760.1); Has 1473 Blast hits to 1374 proteins in 212 species: Archae - 0; Bacteria - 1; Metazoa - 793; Fungi - 286; Plants - 167; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink).;Nucleotidyltransferase family proteinCoding geneHOM002146 ORTHO010797
X AT3G45755similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09510.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446);rna_type=other_rna;transposable element geneTransposon
X AT3G45760Nucleotidyltransferase family protein; BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT3G45750.1); Has 1383 Blast hits to 1289 proteins in 203 species: Archae - 0; Bacteria - 1; Metazoa - 707; Fungi - 279; Plants - 174; Viruses - 0; Other Eukaryotes - 222 (source: NCBI BLink).;Nucleotidyltransferase family proteinCoding geneHOM002146 ORTHO044418
X AT3G45770Polyketide synthase, enoylreductase family protein; FUNCTIONS IN: copper ion binding, zinc ion binding, ATP binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: ARP protein (REF) (TAIR:AT1G49670.1); Has 24073 Blast hits to 23997 proteins in 2260 species: Archae - 304; Bacteria - 15447; Metazoa - 1396; Fungi - 2050; Plants - 679; Viruses - 0; Other Eukaryotes - 4197 (source: NCBI BLink).;Polyketide synthase, enoylreductase family proteinCoding geneHOM002546 ORTHO003928
X AT3G45775copia-like retrotransposon family, has a 9.5e-189 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);rna_type=other_rna;transposable element geneTransposon
V AT3G45780Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT1 undergoes blue-light-dependent autophosphorylation. At least eight phosphorylation sites have been identified in PHOT1. Phosphorylation of serine851 in the activation loop of PHOT1 appears to be required for stomatal opening, chloroplast accumulation, leaf flattening, and phototropism, and phosphorylation of serine849 may also contribute to the regulation of these responses. Phosphorylation-dependent binding of 14-3-3 proteins to the Hinge1 region of PHOT1 appears to require serine350 and serine376.;phototropin 1Coding geneHOM000076 ORTHO000618
V AT3G45790Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G46140.1); Has 119660 Blast hits to 118657 proteins in 4236 species: Archae - 156; Bacteria - 13379; Metazoa - 44420; Fungi - 11857; Plants - 30331; Viruses - 624; Other Eukaryotes - 18893 (source: NCBI BLink).;Protein kinase superfamily proteinCoding geneHOM000043 ORTHO031686
X AT3G45800Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G11620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Plant protein 1589 of unknown functionCoding geneHOM009171 ORTHO031796
X AT3G45810ferric reductase-like transmembrane component family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ferric reductase-like transmembrane component family protein (TAIR:AT5G60010.1); Has 1893 Blast hits to 1761 proteins in 285 species: Archae - 4; Bacteria - 168; Metazoa - 708; Fungi - 301; Plants - 526; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).;ferric reductase-like transmembrane component family proteinCoding geneHOM000327 ORTHO000035
X AT3G45820unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding genesingleton
X AT3G45830unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink).Coding geneHOM002867 ORTHO005829
X AT3G45840Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1377 Blast hits to 647 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1375; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Cysteine/Histidine-rich C1 domain family proteinCoding geneHOM000182 ORTHO000029
X AT3G45850P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G28620.1); Has 65646 Blast hits to 44270 proteins in 2280 species: Archae - 809; Bacteria - 9619; Metazoa - 29444; Fungi - 5953; Plants - 4409; Viruses - 140; Other Eukaryotes - 15272 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily proteinCoding geneHOM000030 ORTHO000232
X AT3G45851unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
V AT3G45860Encodes a cysteine-rich receptor-like protein kinase. Involved in programmed cell death and defense response to pathogen.;cysteine-rich RLK (RECEPTOR-like protein kinase) 4Coding geneHOM000006 ORTHO000250
X AT3G45870nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G19185.1); Has 4395 Blast hits to 4381 proteins in 778 species: Archae - 43; Bacteria - 2750; Metazoa - 6; Fungi - 3; Plants - 1202; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink).;nodulin MtN21 /EamA-like transporter family proteinCoding geneHOM000059 ORTHO044419
X AT3G458802-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G19840.2); Has 1138 Blast hits to 1132 proteins in 270 species: Archae - 0; Bacteria - 266; Metazoa - 428; Fungi - 156; Plants - 146; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).;2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily proteinCoding geneHOM005259 ORTHO006550
X AT3G45890Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes. The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.;Protein of unknown function, DUF647Coding geneHOM001315 ORTHO008687
X AT3G45900Ribonuclease P protein subunit P38-related; BEST Arabidopsis thaliana protein match is: Ribonuclease P protein subunit P38-related (TAIR:AT5G53020.1); Has 1049 Blast hits to 987 proteins in 199 species: Archae - 26; Bacteria - 115; Metazoa - 530; Fungi - 58; Plants - 90; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).;Ribonuclease P protein subunit P38-relatedCoding geneHOM006447 ORTHO010132
X AT3G45910unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM026587 ORTHO044420
V AT3G45920Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46330.1); Has 69592 Blast hits to 69241 proteins in 2538 species: Archae - 24; Bacteria - 8173; Metazoa - 22680; Fungi - 4697; Plants - 25130; Viruses - 161; Other Eukaryotes - 8727 (source: NCBI BLink).;Protein kinase superfamily proteinCoding geneHOM000017 ORTHO212879
X AT3G45930Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone H4 (InterPro:IPR001951), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink).;Histone superfamily proteinCoding geneHOM000364 ORTHO000060
X AT3G45935tRNA-Val (anticodon: AAC);rna_type=pre-trna;pre-tRNARNA gene
X AT3G45940Glycosyl hydrolases family 31 protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal, pedicel, flower; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-xylosidase 1 (TAIR:AT1G68560.1); Has 5440 Blast hits to 5077 proteins in 1113 species: Archae - 86; Bacteria - 3115; Metazoa - 813; Fungi - 823; Plants - 272; Viruses - 2; Other Eukaryotes - 329 (source: NCBI BLink).;Glycosyl hydrolases family 31 proteinCoding geneHOM000508 ORTHO000264
X AT3G45950Pre-mRNA splicing Prp18-interacting factor; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT1G65660.1); Has 528 Blast hits to 525 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 133; Plants - 63; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).;Pre-mRNA splicing Prp18-interacting factorCoding geneHOM002625 ORTHO044421
X AT3G45955tRNA-Val (anticodon: AAC);rna_type=pre-trna;pre-tRNARNA gene
X AT3G45960member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio);expansin-like A3Coding geneHOM000065 ORTHO151552
X AT3G45965tRNA-Val (anticodon: AAC);rna_type=pre-trna;pre-tRNARNA gene
X AT3G45970member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio);expansin-like A1Coding geneHOM000065 ORTHO007964
X AT3G45980Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.;Histone superfamily proteinCoding geneHOM000269 ORTHO168233
X AT3G45990Cofilin/tropomyosin-type actin-binding protein family; FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: stem, embryo, sperm cell; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108), ADF/Cofilin/Destrin (InterPro:IPR017904); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 2 (TAIR:AT3G46000.1); Has 1355 Blast hits to 1354 proteins in 256 species: Archae - 0; Bacteria - 3; Metazoa - 568; Fungi - 135; Plants - 512; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).;Cofilin/tropomyosin-type actin-binding protein familyCoding geneHOM000392 ORTHO044422
X AT3G46000Encodes depolymerizing factor 2.;actin depolymerizing factor 2Coding geneHOM000392 ORTHO000845
X AT3G46010Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo.;actin depolymerizing factor 1Coding geneHOM000392 ORTHO000845
X AT3G46020RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59860.1); Has 998870 Blast hits to 994912 proteins in 36005 species: Archae - 21618; Bacteria - 598911; Metazoa - 204417; Fungi - 25050; Plants - 56514; Viruses - 69090; Other Eukaryotes - 23270 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family proteinCoding geneHOM000057 ORTHO009825
X AT3G46030HTB11; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3283 Blast hits to 3268 proteins in 331 species: Archae - 0; Bacteria - 1; Metazoa - 2245; Fungi - 203; Plants - 469; Viruses - 0; Other Eukaryotes - 365 (source: NCBI BLink).;Histone superfamily proteinCoding geneHOM000269 ORTHO000112
X AT3G46040Regulated by TCP20.;ribosomal protein S15A DCoding geneHOM000586 ORTHO000553
X AT3G46050Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G03000.1); Has 5777 Blast hits to 3964 proteins in 298 species: Archae - 12; Bacteria - 330; Metazoa - 3728; Fungi - 71; Plants - 1272; Viruses - 171; Other Eukaryotes - 193 (source: NCBI BLink).;Galactose oxidase/kelch repeat superfamily proteinCoding geneHOM000376 ORTHO175445
X AT3G46060small GTP-binding protein (ara-3);RAB GTPase homolog 8ACoding geneHOM000032 ORTHO000481
X AT3G46070C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G46080.1); Has 1082 Blast hits to 1044 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 308; Fungi - 0; Plants - 765; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).;C2H2-type zinc finger family proteinCoding geneHOM000155 ORTHO044423
X AT3G46080C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G46090.1); Has 1162 Blast hits to 1123 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 356; Fungi - 0; Plants - 800; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;C2H2-type zinc finger family proteinCoding geneHOM000155 ORTHO175852
X AT3G46086unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
X AT3G46090ZAT7; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT3G46080.1); Has 1028 Blast hits to 997 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 0; Plants - 789; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;C2H2 and C2HC zinc fingers superfamily proteinCoding geneHOM000155 ORTHO044424
X AT3G46100histidyl-tRNA synthetase;Histidyl-tRNA synthetase 1Coding geneHOM003551 ORTHO003486
X AT3G46110LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 195 Blast hits to 168 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 195; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Domain of unknown function (DUF966)Coding geneHOM000796 ORTHO044425
X AT3G46120purple acid phosphatase 19 (PAP19); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 11 (TAIR:AT2G18130.1); Has 1514 Blast hits to 1503 proteins in 302 species: Archae - 1; Bacteria - 342; Metazoa - 182; Fungi - 81; Plants - 741; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink).;purple acid phosphatase 19Coding geneHOM000235 ORTHO140170
X AT3G46130Encodes a putative transcription factor (MYB48) that functions to regulate flavonol biosynthesis primarily in cotyledons.;myb domain protein 48Coding geneHOM000007 ORTHO005143
V AT3G46140Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G45790.1); Has 114262 Blast hits to 113299 proteins in 4290 species: Archae - 158; Bacteria - 12814; Metazoa - 42349; Fungi - 11269; Plants - 28884; Viruses - 608; Other Eukaryotes - 18180 (source: NCBI BLink).;Protein kinase superfamily proteinCoding geneHOM000043 ORTHO031686
X AT3G46150unknown protein; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding genesingleton
V AT3G46160Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G18530.1); Has 100220 Blast hits to 97603 proteins in 2842 species: Archae - 91; Bacteria - 10704; Metazoa - 37529; Fungi - 10113; Plants - 24356; Viruses - 561; Other Eukaryotes - 16866 (source: NCBI BLink).;Protein kinase superfamily proteinCoding geneHOM000043 ORTHO044426
X AT3G46170NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: response to cadmium ion; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G55290.1); Has 125654 Blast hits to 125445 proteins in 3692 species: Archae - 993; Bacteria - 81123; Metazoa - 7022; Fungi - 6581; Plants - 3149; Viruses - 5; Other Eukaryotes - 26781 (source: NCBI BLink).;NAD(P)-binding Rossmann-fold superfamily proteinCoding geneHOM000051 ORTHO234217
X AT3G46180UDP-galactose transporter 5 (UTR5); FUNCTIONS IN: galactose transmembrane transporter activity; INVOLVED IN: transmembrane transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-N-acetylglucosamine (UAA) transporter family (TAIR:AT5G59740.1); Has 1091 Blast hits to 1089 proteins in 231 species: Archae - 0; Bacteria - 4; Metazoa - 540; Fungi - 180; Plants - 207; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).;UDP-galactose transporter 5Coding geneHOM002925 ORTHO002220
X AT3G46183copia-like retrotransposon family, has a 2.7e-230 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);rna_type=other_rna;transposable element geneTransposon
X AT3G46186pseudogene, hypothetical protein, similar to non-LTR reverse transcriptase, putative;pseudogenePseudo gene
X AT3G46190TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT1G58270.1); Has 980 Blast hits to 953 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 12; Plants - 614; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).;TRAF-like family proteinCoding geneHOM000642 ORTHO044427
X AT3G46200nudix hydrolase homolog 9 (NUDT9); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086); Has 111 Blast hits to 111 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).;nudix hydrolase homolog 9Coding geneHOM005390 ORTHO007261
X AT3G46206unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
X AT3G46210Ribosomal protein S5 domain 2-like superfamily protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G07110.1); Has 6526 Blast hits to 6524 proteins in 2015 species: Archae - 242; Bacteria - 4366; Metazoa - 314; Fungi - 210; Plants - 230; Viruses - 0; Other Eukaryotes - 1164 (source: NCBI BLink).;Ribosomal protein S5 domain 2-like superfamily proteinCoding geneHOM002553 ORTHO005830
X AT3G46220unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2042 (InterPro:IPR018611).Coding geneHOM003812 ORTHO002944
X AT3G46230member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds;heat shock protein 17.4Coding geneHOM000139 ORTHO001428
X AT3G46240BEST Arabidopsis thaliana protein match is: receptor protein kinase-related (TAIR:AT3G46270.1); Has 38685 Blast hits to 11525 proteins in 945 species: Archae - 63; Bacteria - 11586; Metazoa - 8974; Fungi - 2953; Plants - 5350; Viruses - 724; Other Eukaryotes - 9035 (source: NCBI BLink).Coding geneHOM000017 ORTHO044428
X AT3G46250pseudogene, similar to leaf senescence-associated receptor-like protein kinase, serine/threonine-specific receptor protein kinase, Arabidopsis thaliana, PIR:S71277; blastp match of 31% identity and 2.8e-15 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris};pseudogenePseudo gene
X AT3G46260protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: receptor protein kinase-related (TAIR:AT3G46270.1); Has 605 Blast hits to 600 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 605; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;protein kinase-relatedCoding geneHOM000017 ORTHO044431
X AT3G46270receptor protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 3538 Blast hits to 1609 proteins in 216 species: Archae - 2; Bacteria - 529; Metazoa - 1458; Fungi - 254; Plants - 829; Viruses - 17; Other Eukaryotes - 449 (source: NCBI BLink).;receptor protein kinase-relatedCoding geneHOM000017 ORTHO044430
X AT3G46280protein kinase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: receptor protein kinase-related (TAIR:AT3G46270.1); Has 639 Blast hits to 634 proteins in 40 species: Archae - 0; Bacteria - 5; Metazoa - 5; Fungi - 8; Plants - 619; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;protein kinase-relatedCoding geneHOM000017 ORTHO044432
V AT3G46290Encodes HERCULES1 (HERK1), a receptor kinase regulated by Brassinosteroids and required for cell elongation during vegetative growth.;hercules receptor kinase 1Coding geneHOM000017 ORTHO000056
X AT3G46300unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46310.1); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM003633 ORTHO044433
X AT3G46310unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46300.1); Has 35 Blast hits to 35 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM003633 ORTHO026035
X AT3G46320Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: chromosome organization, nucleosome assembly; LOCATED IN: nucleus, nucleosome; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 3178 Blast hits to 3178 proteins in 446 species: Archae - 0; Bacteria - 0; Metazoa - 1790; Fungi - 358; Plants - 490; Viruses - 6; Other Eukaryotes - 534 (source: NCBI BLink).;Histone superfamily proteinCoding geneHOM000364 ORTHO000060
V AT3G46330maternal effect embryo arrest 39 (MEE39); FUNCTIONS IN: kinase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46400.1); Has 157192 Blast hits to 122633 proteins in 4636 species: Archae - 101; Bacteria - 13531; Metazoa - 44718; Fungi - 9899; Plants - 69914; Viruses - 393; Other Eukaryotes - 18636 (source: NCBI BLink).;Leucine-rich repeat protein kinase family proteinCoding geneHOM000017 ORTHO000044
V AT3G46340Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46400.1); Has 163065 Blast hits to 121532 proteins in 4648 species: Archae - 95; Bacteria - 13859; Metazoa - 44066; Fungi - 9550; Plants - 76922; Viruses - 348; Other Eukaryotes - 18225 (source: NCBI BLink).;Leucine-rich repeat protein kinase family proteinCoding geneHOM000017 ORTHO000044
X AT3G46345pseudogene, hypothetical protein, similar to non-LTR reverse transcriptase, putative;rna_type=other_rna;transposable element geneTransposon
V AT3G46350Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46340.1); Has 140523 Blast hits to 117178 proteins in 4559 species: Archae - 93; Bacteria - 12764; Metazoa - 42898; Fungi - 9557; Plants - 57776; Viruses - 354; Other Eukaryotes - 17081 (source: NCBI BLink).;Leucine-rich repeat protein kinase family proteinCoding geneHOM000017 ORTHO000044
X AT3G46360unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44755.1); Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM018518 ORTHO031649
V AT3G46370Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46400.1); Has 158526 Blast hits to 120263 proteins in 4504 species: Archae - 95; Bacteria - 12978; Metazoa - 44044; Fungi - 9573; Plants - 73487; Viruses - 375; Other Eukaryotes - 17974 (source: NCBI BLink).;Leucine-rich repeat protein kinase family proteinCoding geneHOM000017 ORTHO000044
X AT3G46375copia-like retrotransposon family, has a 1.3e-32 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family);rna_type=other_rna;transposable element geneTransposon
X AT3G46380unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding genesingleton
X AT3G46382pseudogene, similar to P0416D03.16, similar to non-LTR reverse transcriptase, putative; blastp match of 31% identity and 2.5e-08 P-value to GP|12328468|dbj|BAB21128.1||AP002872 P0416D03.16 {Oryza sativa (japonica cultivar-group)};rna_type=other_rna;transposable element geneTransposon
X AT3G46384pseudogene, receptor-related protein kinase homolog, similar to receptor-like protein kinase homolog; blastp match of 48% identity and 1.1e-26 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris};pseudogenePseudo gene
X AT3G46385pseudogene of unknown protein;pseudogenePseudo gene
X AT3G46387copia-like retrotransposon family, has a 4.6e-41 P-value blast match to GB:BAA22288 pol polyprotein (Ty1_Copia-element) (Oryza australiensis)GB:BAA22288 polyprotein (Ty1_Copia-element) (Oryza australiensis)gi|2443320|dbj|BAA22288.1| polyprotein (RIRE1) (Oryza australiensis) (Ty1_Copia-element);rna_type=other_rna;transposable element geneTransposon
X AT3G46390unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32337.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM012996 ORTHO046691
V AT3G46400Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46370.1); Has 159035 Blast hits to 123588 proteins in 4620 species: Archae - 115; Bacteria - 13661; Metazoa - 44953; Fungi - 10132; Plants - 70985; Viruses - 384; Other Eukaryotes - 18805 (source: NCBI BLink).;Leucine-rich repeat protein kinase family proteinCoding geneHOM000017 ORTHO000044
V AT3G46410Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: peroxisome; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46340.1); Has 102745 Blast hits to 101883 proteins in 4126 species: Archae - 77; Bacteria - 10892; Metazoa - 38794; Fungi - 7974; Plants - 30630; Viruses - 280; Other Eukaryotes - 14098 (source: NCBI BLink).;Protein kinase superfamily proteinCoding geneHOM000017 ORTHO081498
V AT3G46420Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G46400.1); Has 166241 Blast hits to 122387 proteins in 4716 species: Archae - 97; Bacteria - 13657; Metazoa - 44642; Fungi - 9766; Plants - 79355; Viruses - 364; Other Eukaryotes - 18360 (source: NCBI BLink).;Leucine-rich repeat protein kinase family proteinCoding geneHOM000017 ORTHO000044