Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_ath_47
Cluster type
GO
Species
Arabidopsis thaliana
Chromosome
4
E-value
0.00000165422
GO label
GO:0044464
GO description
cell part
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM0000025123122225
HOM0000063414116120
HOM000012217474120
HOM0000132150111125
HOM000017190694322
HOM000019178473125
HOM000020175769122
HOM000021175595125
HOM000025169060125
HOM000029163084120
HOM000032149880125
HOM000037134458125
HOM00003813227119
HOM000041127954124
HOM000043125662125
HOM000046115451125
HOM00007188531225
HOM00007585246420
HOM00008083934125
HOM00008975733420
HOM00009075427125
HOM00010562625122
HOM00010662630125
HOM00011757128125
HOM00013153228220
HOM00013652715125
HOM00014947427123
HOM00015845917120
HOM00016942523122
HOM0001844016125
HOM00018640023121
HOM00018739619325
HOM0002173538225
HOM00021935212125
HOM00023333511315
HOM00030827617120
HOM00031427212125
HOM00035625312119
HOM00037324410125
HOM00040223210125
HOM00047220516124
HOM00049519810120
HOM0005041969222
HOM0005141927120
HOM0005271884120
HOM0005671777123
HOM0005861718125
HOM0006031676125
HOM0006641586122
HOM0007491457125
HOM0007661426124
HOM0008281325222
HOM0008521293125
HOM0008651284124
HOM0008691272124
HOM0009191215124
HOM0009201215119
HOM0009731165121
HOM0010221105120
HOM0010761053118
HOM0010791053120
HOM0011071024121
HOM0011311004120
HOM001143995223
HOM001164985125
HOM001216946121
HOM001226935124
HOM001247929119
HOM001449813125
HOM001566753123
HOM001632733125
HOM001903653120
HOM002038613123
HOM002051612125
HOM002055613119
HOM002085609825
HOM002224572125
HOM002707474321
HOM002757473121
HOM002821461125
HOM002828452124
HOM002963442124
HOM003042432123
HOM003097421123
HOM003298403121
HOM003397392123
HOM003585372125
HOM003978341124
HOM003996341123
HOM004422321125
HOM00452531219
HOM004690301119
HOM004770301123
HOM005082281119
HOM005192281121
HOM005194282121
HOM005439271121
HOM005585261119
HOM005665251119
HOM005717251123
HOM005939242113
HOM006112233110
HOM006742191114
HOM00682918527
HOM006914181115
HOM00704517862
HOM0086349422
HOM0105696312
HOM0139194312
HOM0238962112
HOM0246672112
HOM0271342112
HOM0271352112

Gene information

In cluster Gene id Description Gene type Gene family
V AT4G28540casein kinase I-like 6 (CKL6); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasmodesma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: dual specificity kinase 1 (TAIR:AT1G03930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;casein kinase I-like 6Coding geneHOM000187 ORTHO000489
V AT4G28550Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G20440.2); Has 4375 Blast hits to 4233 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 2348; Fungi - 794; Plants - 640; Viruses - 0; Other Eukaryotes - 593 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily proteinCoding geneHOM001216 ORTHO008577
V AT4G28556Encodes RIC7, the downstream effector of active Rop2 GTPase.;PAK-box/P21-Rho-binding family proteinCoding geneHOM001247 ORTHO045701
V AT4G28560encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC6 and RIC8 (subfamily group II). Gene is expressed in all tissues examined.;ROP-interactive CRIB motif-containing protein 7Coding geneHOM000002 ORTHO012064
X AT4G28564unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
V AT4G28570Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT1G03990.1); Has 3734 Blast hits to 3404 proteins in 773 species: Archae - 46; Bacteria - 2451; Metazoa - 41; Fungi - 246; Plants - 166; Viruses - 0; Other Eukaryotes - 784 (source: NCBI BLink).;Long-chain fatty alcohol dehydrogenase family proteinCoding geneHOM001131 ORTHO000515
V AT4G28580Transmembrane magnesium transporter. One of nine family members. Functions in pollen development.;magnesium transport 5Coding geneHOM000373 ORTHO045700
V AT4G28590FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).Coding geneHOM001632 ORTHO007414
V AT4G28600encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.;no pollen germination related 2Coding geneHOM001079 ORTHO001606
V AT4G28610Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling.;phosphate starvation response 1Coding geneHOM000080 ORTHO005301
V AT4G28620Half-molecule ABC transporter ATM2. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth.;ABC transporter of the mitochondrion 2Coding geneHOM000071 ORTHO002288
V AT4G28630Half-molecule ABC transporter ATM1. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth.;ABC transporter of the mitochondrion 1Coding geneHOM000071 ORTHO002288
V AT4G28640Auxin induced gene, IAA11 (IAA11).;indole-3-acetic acid inducible 11Coding geneHOM000131 ORTHO011490
V AT4G28650Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, guard cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT1G08590.1); Has 236312 Blast hits to 142770 proteins in 4269 species: Archae - 150; Bacteria - 21752; Metazoa - 75925; Fungi - 11533; Plants - 97988; Viruses - 432; Other Eukaryotes - 28532 (source: NCBI BLink).;Leucine-rich repeat transmembrane protein kinase family proteinCoding geneHOM000002 ORTHO000048
X AT4G28652Potential natural antisense gene, locus overlaps with AT4G28650;rna_type=other_rnaRNA gene
V AT4G28660Similar to PsbW subunit of photosystem II.;photosystem II reaction center PSB28 proteinCoding geneHOM003996 ORTHO002821
V AT4G28670FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (TAIR:AT1G70520.1); Has 117021 Blast hits to 115588 proteins in 4482 species: Archae - 87; Bacteria - 12256; Metazoa - 43536; Fungi - 10005; Plants - 33534; Viruses - 536; Other Eukaryotes - 17067 (source: NCBI BLink).;Protein kinase family protein with domain of unknown function (DUF26)Coding geneHOM000006 ORTHO045699
V AT4G28680Encodes a stress-induced tyrosine decarboxylase (TyrDC). Recombinant (His)6-TyrDC expressed in E. coli catalyzes the conversion of L-tyrosine to tyramine. Recombinant TyrDC forms tetramers.;L-tyrosine decarboxylaseCoding geneHOM000869 ORTHO003866
X AT4G28690BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 13 (TAIR:AT2G20310.1); Has 455 Blast hits to 438 proteins in 127 species: Archae - 0; Bacteria - 18; Metazoa - 148; Fungi - 91; Plants - 136; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink).Coding geneHOM001937 ORTHO045698
V AT4G28700ammonium transporter 1;4 (AMT1;4); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: leaf whorl, sepal, male gametophyte, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;1 (TAIR:AT4G13510.1); Has 11355 Blast hits to 11337 proteins in 2068 species: Archae - 224; Bacteria - 4683; Metazoa - 331; Fungi - 433; Plants - 496; Viruses - 0; Other Eukaryotes - 5188 (source: NCBI BLink).;ammonium transporter 1;4Coding geneHOM000919 ORTHO000263
X AT4G28703RmlC-like cupins superfamily protein; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;RmlC-like cupins superfamily proteinCoding geneHOM001308 ORTHO006388
V AT4G28706pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT5G43910.2).;pfkB-like carbohydrate kinase family proteinCoding geneHOM002828 ORTHO005990
V AT4G28710member of Myosin-like proteins;Myosin family protein with Dil domainCoding geneHOM000106 ORTHO000046
X AT4G28720Auxin biosynthetic gene regulated by RVE1. Overexpression leads to suppression of bri1 phenotype.;Flavin-binding monooxygenase family proteinCoding geneHOM000351 ORTHO001134
V AT4G28730Glutaredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Glutaredoxin, eukaryotic/virial (InterPro:IPR011899), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G20270.1); Has 4412 Blast hits to 4405 proteins in 1169 species: Archae - 6; Bacteria - 1982; Metazoa - 422; Fungi - 333; Plants - 692; Viruses - 111; Other Eukaryotes - 866 (source: NCBI BLink).;Glutaredoxin family proteinCoding geneHOM000149 ORTHO009590
V AT4G28740FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneHOM001449 ORTHO003595
V AT4G28750mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I;Photosystem I reaction centre subunit IV / PsaE proteinCoding geneHOM003397 ORTHO045697
X AT4G28760Protein of unknown function (DUF3741); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT2G20240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein of unknown function (DUF3741)Coding geneHOM002654 ORTHO010283
V AT4G28770Tetraspanin family protein; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1).;Tetraspanin family proteinCoding geneHOM001107 ORTHO045696
X AT4G28775unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneHOM019945 ORTHO031832
V AT4G28780GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: Li-tolerant lipase 1 (TAIR:AT3G04290.1); Has 3338 Blast hits to 3300 proteins in 166 species: Archae - 0; Bacteria - 226; Metazoa - 0; Fungi - 7; Plants - 3087; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).;GDSL-like Lipase/Acylhydrolase superfamily proteinCoding geneHOM000029 ORTHO017531
V AT4G28790basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G28800.1); Has 3233 Blast hits to 3214 proteins in 170 species: Archae - 0; Bacteria - 4; Metazoa - 50; Fungi - 65; Plants - 3113; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily proteinCoding geneHOM000075 ORTHO082249
V AT4G28800basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G28811.1); Has 4700 Blast hits to 4615 proteins in 331 species: Archae - 0; Bacteria - 20; Metazoa - 924; Fungi - 276; Plants - 3361; Viruses - 20; Other Eukaryotes - 99 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily proteinCoding geneHOM000075 ORTHO078271
V AT4G28811basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G28800.1); Has 3934 Blast hits to 3888 proteins in 271 species: Archae - 0; Bacteria - 6; Metazoa - 507; Fungi - 186; Plants - 3207; Viruses - 3; Other Eukaryotes - 25 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily proteinCoding geneHOM000075 ORTHO045695
V AT4G28815basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G28800.1); Has 3964 Blast hits to 3920 proteins in 287 species: Archae - 0; Bacteria - 0; Metazoa - 673; Fungi - 252; Plants - 3017; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily proteinCoding geneHOM000075 ORTHO088046
X AT4G28820HIT-type Zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 375 Blast hits to 372 proteins in 152 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 117; Plants - 47; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).;HIT-type Zinc finger family proteinCoding geneHOM006449 ORTHO008851
X AT4G28830S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 3625 Blast hits to 3623 proteins in 1319 species: Archae - 217; Bacteria - 2993; Metazoa - 122; Fungi - 3; Plants - 52; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily proteinCoding geneHOM005470 ORTHO006709
V AT4G28840unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20080.1); Has 71 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).Coding geneHOM005939 ORTHO010282
V AT4G28850xyloglucan endotransglucosylase/hydrolase 26 (XTH26); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 16 (TAIR:AT3G23730.1); Has 2230 Blast hits to 2210 proteins in 325 species: Archae - 0; Bacteria - 312; Metazoa - 0; Fungi - 457; Plants - 1370; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).;xyloglucan endotransglucosylase/hydrolase 26Coding geneHOM000089 ORTHO012633
V AT4G28860casein kinase I-like 4 (ckl4); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 3 (TAIR:AT4G28880.1); Has 66689 Blast hits to 66255 proteins in 2362 species: Archae - 56; Bacteria - 11242; Metazoa - 25400; Fungi - 7755; Plants - 10110; Viruses - 362; Other Eukaryotes - 11764 (source: NCBI BLink).;casein kinase I-like 4Coding geneHOM000187 ORTHO002287
X AT4G28870unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49680.1); Has 22985 Blast hits to 1198 proteins in 188 species: Archae - 0; Bacteria - 21210; Metazoa - 895; Fungi - 112; Plants - 141; Viruses - 114; Other Eukaryotes - 513 (source: NCBI BLink).Coding geneHOM027673 ORTHO046703
V AT4G28880casein kinase I-like 3 (ckl3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase I-like 4 (TAIR:AT4G28860.1); Has 64022 Blast hits to 63665 proteins in 2312 species: Archae - 48; Bacteria - 11126; Metazoa - 24220; Fungi - 7316; Plants - 9570; Viruses - 322; Other Eukaryotes - 11420 (source: NCBI BLink).;casein kinase I-like 3Coding geneHOM000187 ORTHO002287
V AT4G28890RING/U-box superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: root stele, root endodermis, hypocotyl, root, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G20030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;RING/U-box superfamily proteinCoding geneHOM000013 ORTHO008122
X AT4G28900copia-like retrotransposon family, has a 7.7e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays);rna_type=other_rna;transposable element geneTransposon
V AT4G28910novel interactor of JAZ (NINJA); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein 3 (TAIR:AT3G29575.4); Has 317 Blast hits to 301 proteins in 73 species: Archae - 2; Bacteria - 15; Metazoa - 43; Fungi - 39; Plants - 175; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink).;novel interactor of JAZCoding geneHOM005082 ORTHO006708
X AT4G28915tRNA-Ser (anticodon: GCT);rna_type=pre-trna;pre-tRNARNA gene
X AT4G28920Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT3G44770.2); Has 191 Blast hits to 190 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF626)Coding geneHOM003768 ORTHO045692
V AT4G28930unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12930.1); Has 12 Blast hits to 12 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM013919 ORTHO042367
V AT4G28940Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24340.1); Has 4063 Blast hits to 3116 proteins in 1287 species: Archae - 0; Bacteria - 3887; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).;Phosphorylase superfamily proteinCoding geneHOM000865 ORTHO010922
V AT4G28950A member of ROP GTPase gene family.;RHO-related protein from plants 9Coding geneHOM000032 ORTHO008850
X AT4G28960similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23930.1); similar to unknown [Atrina ri (GB:AAU04809.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048);rna_type=other_rna;transposable element geneTransposon
X AT4G28970Mutator-like transposase family, has a 8.1e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain);rna_type=other_rna;transposable element geneTransposon
V AT4G28980Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.;CDK-activating kinase 1ATCoding geneHOM000019 ORTHO008849
V AT4G28990RNA-binding protein-related; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); Has 1307 Blast hits to 1081 proteins in 160 species: Archae - 0; Bacteria - 36; Metazoa - 556; Fungi - 137; Plants - 464; Viruses - 16; Other Eukaryotes - 98 (source: NCBI BLink).;RNA-binding protein-relatedCoding geneHOM006742 ORTHO011489
X AT4G29000Tesmin/TSO1-like CXC domain-containing protein; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT2G20110.1); Has 1016 Blast hits to 666 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 4; Plants - 322; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).;Tesmin/TSO1-like CXC domain-containing proteinCoding geneHOM001196 ORTHO002820
V AT4G29010Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities;Enoyl-CoA hydratase/isomerase familyCoding geneHOM000852 ORTHO000383
V AT4G29020glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 92355 Blast hits to 23750 proteins in 1587 species: Archae - 185; Bacteria - 38167; Metazoa - 25977; Fungi - 4591; Plants - 7302; Viruses - 1155; Other Eukaryotes - 14978 (source: NCBI BLink).;glycine-rich proteinCoding geneHOM027134 ORTHO045691
V AT4G29030Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; Has 83209 Blast hits to 19401 proteins in 1362 species: Archae - 122; Bacteria - 36227; Metazoa - 23555; Fungi - 3961; Plants - 7492; Viruses - 888; Other Eukaryotes - 10964 (source: NCBI BLink).;Putative membrane lipoproteinCoding geneHOM024667 ORTHO045690
V AT4G29033Encodes a defensin-like (DEFL) family protein.;Defensin-like (DEFL) family proteinCoding geneHOM027135 ORTHO045689
V AT4G29035Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: S-protein homologue 1 (TAIR:AT4G16295.1); Has 254 Blast hits to 249 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Plant self-incompatibility protein S1 familyCoding geneHOM004525 ORTHO009589
V AT4G2904026S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,;regulatory particle AAA-ATPase 2ACoding geneHOM000025 ORTHO001084
V AT4G29050Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: carbohydrate binding, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT1G70110.1); Has 123408 Blast hits to 121938 proteins in 4814 species: Archae - 120; Bacteria - 14220; Metazoa - 44809; Fungi - 10855; Plants - 34836; Viruses - 425; Other Eukaryotes - 18143 (source: NCBI BLink).;Concanavalin A-like lectin protein kinase family proteinCoding geneHOM000041 ORTHO014059
V AT4G29060embryo defective 2726 (emb2726); FUNCTIONS IN: RNA binding, translation elongation factor activity; INVOLVED IN: translational elongation, response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor Ts, conserved site (InterPro:IPR018101), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: translation elongation factor Ts (EF-Ts), putative (TAIR:AT4G11120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;elongation factor Ts family proteinCoding geneHOM003097 ORTHO003662
X AT4G29070Phospholipase A2 family protein; CONTAINS InterPro DOMAIN/s: Phospholipase A2 (InterPro:IPR016090); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Phospholipase A2 family proteinCoding geneHOM006106 ORTHO007413
V AT4G29080phytochrome-associated protein 2 (PAP2);phytochrome-associated protein 2Coding geneHOM000131 ORTHO013138
V AT4G29090Ribonuclease H-like superfamily protein; FUNCTIONS IN: RNA binding, RNA-directed DNA polymerase activity, nucleic acid binding; INVOLVED IN: RNA-dependent DNA replication; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G34320.1); Has 2218 Blast hits to 2138 proteins in 33 species: Archae - 2; Bacteria - 6; Metazoa - 6; Fungi - 0; Plants - 2203; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Ribonuclease H-like superfamily proteinCoding geneHOM000038 ORTHO000449
V AT4G29100basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G20100.1); Has 1864 Blast hits to 1723 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 29; Plants - 923; Viruses - 0; Other Eukaryotes - 836 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily proteinCoding geneHOM000356 ORTHO008848
V AT4G29103unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
V AT4G29110unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM001076 ORTHO045688
X AT4G291206-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G71170.1); Has 17656 Blast hits to 17632 proteins in 2309 species: Archae - 156; Bacteria - 10896; Metazoa - 453; Fungi - 508; Plants - 334; Viruses - 3; Other Eukaryotes - 5306 (source: NCBI BLink).;6-phosphogluconate dehydrogenase family proteinCoding geneHOM000824 ORTHO009588
V AT4G29130Encodes a hexokinase (HXK1) in the plant glucose-signaling network. Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment.;hexokinase 1Coding geneHOM000664 ORTHO000590
V AT4G29140MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: shoot apex, embryo, hypocotyl, root; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G19700.1); Has 10278 Blast hits to 10238 proteins in 1962 species: Archae - 240; Bacteria - 7294; Metazoa - 150; Fungi - 320; Plants - 1306; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).;MATE efflux family proteinCoding geneHOM000046 ORTHO008050
X AT4G29150IQ-domain 25 (IQD25); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 784 Blast hits to 779 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 731; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).;IQ-domain 25Coding geneHOM000725 ORTHO045687
X AT4G29160SNF7.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT2G19830.1); Has 1847 Blast hits to 1847 proteins in 245 species: Archae - 2; Bacteria - 29; Metazoa - 703; Fungi - 444; Plants - 428; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).;SNF7 family proteinCoding geneHOM000094 ORTHO002459
X AT4G29170A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.;Mnd1 family proteinCoding geneHOM005611 ORTHO008121
V AT4G29180root hair specific 16 (RHS16); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G29450.1).;root hair specific 16Coding geneHOM000017 ORTHO000044
X AT4G29190Zinc finger C-x8-C-x5-C-x3-H type family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: CCCH-type zinc finger family protein (TAIR:AT2G19810.1); Has 726 Blast hits to 700 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 3; Plants - 406; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).;Zinc finger C-x8-C-x5-C-x3-H type family proteinCoding geneHOM000398 ORTHO003034
X AT4G29200Beta-galactosidase related protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT5G49250.1); Has 65 Blast hits to 65 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Beta-galactosidase related proteinCoding geneHOM007787 ORTHO031567
V AT4G29210The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism. Note that conflicting nomenclature exists in the literature: At4g29210 is named as GGT3 in Plant J. 2007 Mar 49(5):878-88; At4g29210 is named as GGT4 and At1g69820 as GGT3 in Plant Physiol. 2007 Aug 144(4):1715-32.;gamma-glutamyl transpeptidase 4Coding geneHOM000567 ORTHO006707
V AT4G29220phosphofructokinase 1 (PFK1); FUNCTIONS IN: 6-phosphofructokinase activity; INVOLVED IN: glycolysis; LOCATED IN: cytosol, 6-phosphofructokinase complex, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 3 (TAIR:AT4G26270.1); Has 7864 Blast hits to 7397 proteins in 2157 species: Archae - 28; Bacteria - 5161; Metazoa - 680; Fungi - 324; Plants - 394; Viruses - 2; Other Eukaryotes - 1275 (source: NCBI BLink).;phosphofructokinase 1Coding geneHOM000219 ORTHO000153
X AT4G29230NAC domain containing protein 75 (NAC075); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; EXPRESSED IN: inflorescence meristem, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 99 (TAIR:AT5G56620.1); Has 3052 Blast hits to 2928 proteins in 176 species: Archae - 2; Bacteria - 22; Metazoa - 475; Fungi - 52; Plants - 2293; Viruses - 3; Other Eukaryotes - 205 (source: NCBI BLink).;NAC domain containing protein 75Coding geneHOM000659 ORTHO008120
V AT4G29240Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G19780.1); Has 63461 Blast hits to 20951 proteins in 903 species: Archae - 14; Bacteria - 2781; Metazoa - 8815; Fungi - 480; Plants - 47912; Viruses - 34; Other Eukaryotes - 3425 (source: NCBI BLink).;Leucine-rich repeat (LRR) family proteinCoding geneHOM000308 ORTHO006706
X AT4G29250HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G02890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;HXXXD-type acyl-transferase family proteinCoding geneHOM004484 ORTHO013137
V AT4G29260HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29270.1); Has 713 Blast hits to 710 proteins in 181 species: Archae - 0; Bacteria - 300; Metazoa - 2; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).;HAD superfamily, subfamily IIIB acid phosphatase Coding geneHOM000504 ORTHO010921
V AT4G29270HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 719 Blast hits to 714 proteins in 195 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 0; Plants - 383; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;HAD superfamily, subfamily IIIB acid phosphatase Coding geneHOM000504 ORTHO031831
V AT4G29273Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 23Coding geneHOM007045 ORTHO043759
X AT4G29276Pseudogene of AT4G29270; acid phosphatase class B family protein;pseudogenePseudo gene
V AT4G29280Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 22Coding geneHOM007045 ORTHO045686
X AT4G29281Pseudogene of AT4G29270; acid phosphatase class B family protein;pseudogenePseudo gene
V AT4G29283Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 21Coding geneHOM007045 ORTHO231073
V AT4G29285Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 24Coding geneHOM010569 ORTHO045685
V AT4G29290Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 26Coding geneHOM007045 ORTHO045684
V AT4G29300Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 27Coding geneHOM007045 ORTHO045683
V AT4G29305Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 25Coding geneHOM007045 ORTHO252037
V AT4G29310Protein of unknown function (DUF1005); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT1G10020.1); Has 138 Blast hits to 138 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Protein of unknown function (DUF1005)Coding geneHOM001022 ORTHO009587
X AT4G29330DERLIN-1 (DER1); CONTAINS InterPro DOMAIN/s: Der1-like (InterPro:IPR007599); BEST Arabidopsis thaliana protein match is: DERLIN-2.2 (TAIR:AT4G04860.1); Has 918 Blast hits to 916 proteins in 241 species: Archae - 0; Bacteria - 22; Metazoa - 340; Fungi - 200; Plants - 147; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).;DERLIN-1Coding geneHOM001543 ORTHO004618
V AT4G29340Profilin is a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton in eukaryotes, including higher plants. PRF4 and PRF5 are late pollen-specific and are not detectable in other cell types of the plant body including microspores and root hairs. Immunocytochemical studies at the subcellular level reveal that both the constitutive and pollen-specific profilins are abundant in the cytoplasm. In vegetative cell types, such as root apical cells, profilins showed localization to nuclei in addition to the cytoplasmic staining.;profilin 4Coding geneHOM001143 ORTHO025970
V AT4G29350Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression.;profilin 2Coding geneHOM001143 ORTHO000537
V AT4G29360O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G56590.1); Has 2836 Blast hits to 2784 proteins in 145 species: Archae - 0; Bacteria - 6; Metazoa - 3; Fungi - 20; Plants - 2794; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).;O-Glycosyl hydrolases family 17 proteinCoding geneHOM000021 ORTHO025969
X AT4G29370Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G49000.2); Has 2255 Blast hits to 2075 proteins in 174 species: Archae - 19; Bacteria - 136; Metazoa - 830; Fungi - 22; Plants - 1164; Viruses - 24; Other Eukaryotes - 60 (source: NCBI BLink).;Galactose oxidase/kelch repeat superfamily proteinCoding geneHOM000376 ORTHO045682
V AT4G29380protein kinase family protein / WD-40 repeat family protein; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), WD40 repeat 2 (InterPro:IPR019782), Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), HEAT, type 2 (InterPro:IPR021133), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein kinase, catalytic domain (InterPro:IPR000719), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G33770.1); Has 29441 Blast hits to 28057 proteins in 1177 species: Archae - 18; Bacteria - 2884; Metazoa - 11045; Fungi - 5111; Plants - 4360; Viruses - 46; Other Eukaryotes - 5977 (source: NCBI BLink).;protein kinase family protein / WD-40 repeat family proteinCoding geneHOM003978 ORTHO004617
V AT4G29390Ribosomal protein S30 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30 (InterPro:IPR006846); BEST Arabidopsis thaliana protein match is: Ribosomal protein S30 family protein (TAIR:AT5G56670.1); Has 682 Blast hits to 682 proteins in 246 species: Archae - 2; Bacteria - 0; Metazoa - 304; Fungi - 135; Plants - 106; Viruses - 1; Other Eukaryotes - 134 (source: NCBI BLink).;Ribosomal protein S30 family proteinCoding geneHOM002757 ORTHO001022
X AT4G29400Protein of unknown function (DUF3531); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3531 (InterPro:IPR021920); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3531) (TAIR:AT5G08400.2); Has 315 Blast hits to 315 proteins in 83 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).;Protein of unknown function (DUF3531)Coding geneHOM002574 ORTHO010281
V AT4G29410Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT2G19730.3); Has 531 Blast hits to 531 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).;Ribosomal L28e protein familyCoding geneHOM001566 ORTHO001165
X AT4G29415tRNA-Pro (anticodon: TGG);rna_type=pre-trna;pre-tRNARNA gene
X AT4G29420F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 59 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;F-box/RNI-like superfamily proteinCoding geneHOM001566 ORTHO013136
V AT4G29430ribosomal protein S15A E (rps15ae); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, cytosolic small ribosomal subunit, cytosolic ribosome, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: ribosomal protein S15A B (TAIR:AT2G19720.1); Has 3554 Blast hits to 3554 proteins in 1296 species: Archae - 277; Bacteria - 1753; Metazoa - 425; Fungi - 219; Plants - 281; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).;ribosomal protein S15A ECoding geneHOM000586 ORTHO007153
X AT4G29440Regulator of Vps4 activity in the MVB pathway protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT2G19710.1); Has 13682 Blast hits to 8543 proteins in 697 species: Archae - 14; Bacteria - 1875; Metazoa - 6005; Fungi - 2284; Plants - 648; Viruses - 80; Other Eukaryotes - 2776 (source: NCBI BLink).;Regulator of Vps4 activity in the MVB pathway proteinCoding geneHOM000293 ORTHO045681
V AT4G29450Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: root hair specific 16 (TAIR:AT4G29180.2); Has 136974 Blast hits to 122023 proteins in 4538 species: Archae - 125; Bacteria - 13867; Metazoa - 43814; Fungi - 10104; Plants - 50658; Viruses - 384; Other Eukaryotes - 18022 (source: NCBI BLink).;Leucine-rich repeat protein kinase family proteinCoding geneHOM000017 ORTHO000044
V AT4G29460Phospholipase A2 family protein; FUNCTIONS IN: phospholipase A2 activity; INVOLVED IN: phospholipid metabolic process, lipid catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase A2 (InterPro:IPR016090), Phospholipase A2, active site (InterPro:IPR013090); BEST Arabidopsis thaliana protein match is: Phospholipase A2 family protein (TAIR:AT4G29470.1); Has 273 Blast hits to 273 proteins in 60 species: Archae - 0; Bacteria - 21; Metazoa - 140; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;Phospholipase A2 family proteinCoding geneHOM000828 ORTHO003426
V AT4G29470Phospholipase A2 family protein; FUNCTIONS IN: phospholipase A2 activity; INVOLVED IN: phospholipid metabolic process, lipid catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Phospholipase A2, active site (InterPro:IPR013090), Phospholipase A2 (InterPro:IPR016090); BEST Arabidopsis thaliana protein match is: Phospholipase A2 family protein (TAIR:AT4G29460.1); Has 245 Blast hits to 245 proteins in 48 species: Archae - 0; Bacteria - 14; Metazoa - 119; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;Phospholipase A2 family proteinCoding geneHOM000828 ORTHO003426
V AT4G29480Mitochondrial ATP synthase subunit G protein; FUNCTIONS IN: hydrogen ion transmembrane transporter activity; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F0 complex, subunit G, mitochondrial (InterPro:IPR006808); BEST Arabidopsis thaliana protein match is: Mitochondrial ATP synthase subunit G protein (TAIR:AT2G19680.2); Has 96 Blast hits to 96 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;Mitochondrial ATP synthase subunit G proteinCoding geneHOM000766 ORTHO001356
V AT4G29490Metallopeptidase M24 family protein; FUNCTIONS IN: manganese ion binding, aminopeptidase activity; INVOLVED IN: cellular process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT1G09300.1); Has 11688 Blast hits to 11680 proteins in 2580 species: Archae - 275; Bacteria - 8182; Metazoa - 386; Fungi - 373; Plants - 96; Viruses - 0; Other Eukaryotes - 2376 (source: NCBI BLink).;Metallopeptidase M24 family proteinCoding geneHOM004422 ORTHO004616
V AT4G29510Has arginine N-methyltransferase activity. Modifies AtMBD7.;arginine methyltransferase 11Coding geneHOM000402 ORTHO005989
V AT4G29520LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Saposin B (InterPro:IPR008139); Has 137 Blast hits to 137 proteins in 50 species: Archae - 2; Bacteria - 0; Metazoa - 41; Fungi - 10; Plants - 36; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).Coding geneHOM002821 ORTHO002546
X AT4G29530Pyridoxal phosphate phosphatase-related protein; FUNCTIONS IN: phosphatase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate phosphatase, PHOSPHO2 (InterPro:IPR016965), HAD-superfamily hydrolase, subfamily IB, PSPase-like (InterPro:IPR006383), Pyridoxal phosphate phosphatase-related (InterPro:IPR006384); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate phosphatase-related protein (TAIR:AT1G17710.1); Has 373 Blast hits to 361 proteins in 111 species: Archae - 0; Bacteria - 31; Metazoa - 175; Fungi - 16; Plants - 106; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).;Pyridoxal phosphate phosphatase-related proteinCoding geneHOM001187 ORTHO011488
X AT4G29540bacterial transferase hexapeptide repeat-containing protein; FUNCTIONS IN: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, transferase activity; INVOLVED IN: lipid biosynthetic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451), Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (InterPro:IPR010137); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzymes superfamily protein (TAIR:AT4G05210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;bacterial transferase hexapeptide repeat-containing proteinCoding geneHOM005461 ORTHO010920
V AT4G29548unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
X AT4G29550Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF626) (TAIR:AT3G44770.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein of unknown function (DUF626)Coding geneHOM003768 ORTHO045679
X AT4G29560CONTAINS InterPro DOMAIN/s: Fanconi Anaemia group E protein, C-terminal (InterPro:IPR021025); Has 41 Blast hits to 41 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).Coding geneHOM006746 ORTHO011487
V AT4G29570Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29580.2); Has 1057 Blast hits to 1055 proteins in 440 species: Archae - 0; Bacteria - 888; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family proteinCoding geneHOM002085 ORTHO041420
V AT4G29580Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29570.1); Has 1366 Blast hits to 1366 proteins in 563 species: Archae - 0; Bacteria - 1122; Metazoa - 6; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family proteinCoding geneHOM002085 ORTHO045680
V AT4G29590S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G01660.1); Has 1031 Blast hits to 1031 proteins in 322 species: Archae - 24; Bacteria - 646; Metazoa - 0; Fungi - 12; Plants - 95; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily proteinCoding geneHOM002051 ORTHO005988
V AT4G29600Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29620.1); Has 2822 Blast hits to 2815 proteins in 1241 species: Archae - 50; Bacteria - 2209; Metazoa - 129; Fungi - 52; Plants - 128; Viruses - 0; Other Eukaryotes - 254 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family proteinCoding geneHOM002085 ORTHO045678
V AT4G29610Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 3306 Blast hits to 3284 proteins in 1430 species: Archae - 58; Bacteria - 2532; Metazoa - 138; Fungi - 102; Plants - 130; Viruses - 0; Other Eukaryotes - 346 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family proteinCoding geneHOM002085 ORTHO235543
V AT4G29620Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 1708 Blast hits to 1703 proteins in 740 species: Archae - 42; Bacteria - 1328; Metazoa - 70; Fungi - 9; Plants - 128; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family proteinCoding geneHOM002085 ORTHO045677
V AT4G29630Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29600.1); Has 3200 Blast hits to 3200 proteins in 1316 species: Archae - 54; Bacteria - 2465; Metazoa - 155; Fungi - 71; Plants - 127; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family proteinCoding geneHOM002085 ORTHO124204
V AT4G29640Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: cytidine deamination, cytidine metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29610.1); Has 1027 Blast hits to 1027 proteins in 425 species: Archae - 0; Bacteria - 850; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family proteinCoding geneHOM002085 ORTHO045676
V AT4G29650Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: cytidine deaminase activity, catalytic activity, zinc ion binding; INVOLVED IN: pyrimidine salvage, cytidine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29610.1); Has 939 Blast hits to 937 proteins in 395 species: Archae - 0; Bacteria - 794; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).;Cytidine/deoxycytidylate deaminase family proteinCoding geneHOM002085 ORTHO045675
X AT4G29654Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: transmembrane kinase 1 (TAIR:AT1G66150.1); Has 3461 Blast hits to 3431 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 184; Fungi - 0; Plants - 3253; Viruses - 10; Other Eukaryotes - 12 (source: NCBI BLink).;Protein kinase superfamily proteinCoding geneHOM000004 ORTHO183786
V AT4G29658prenylated RAB acceptor 1.C (PRA1.C); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;prenylated RAB acceptor 1.CCoding geneHOM000472 ORTHO215817
X AT4G29660EMBRYO DEFECTIVE 2752 (EMB2752); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;embryo defective 2752Coding geneHOM000563 ORTHO009586
V AT4G29670Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.;atypical CYS HIS rich thioredoxin 2Coding geneHOM001164 ORTHO001892
V AT4G29680Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2446 Blast hits to 2426 proteins in 629 species: Archae - 13; Bacteria - 1090; Metazoa - 671; Fungi - 207; Plants - 107; Viruses - 6; Other Eukaryotes - 352 (source: NCBI BLink).;Alkaline-phosphatase-like family proteinCoding geneHOM002707 ORTHO001891
V AT4G29690Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29700.1); Has 2123 Blast hits to 2102 proteins in 549 species: Archae - 19; Bacteria - 886; Metazoa - 669; Fungi - 140; Plants - 106; Viruses - 6; Other Eukaryotes - 297 (source: NCBI BLink).;Alkaline-phosphatase-like family proteinCoding geneHOM002707 ORTHO021236
V AT4G29700Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2237 Blast hits to 2218 proteins in 571 species: Archae - 24; Bacteria - 916; Metazoa - 704; Fungi - 177; Plants - 108; Viruses - 6; Other Eukaryotes - 302 (source: NCBI BLink).;Alkaline-phosphatase-like family proteinCoding geneHOM002707 ORTHO021236
X AT4G29710Alkaline-phosphatase-like family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29700.1); Has 956 Blast hits to 954 proteins in 215 species: Archae - 0; Bacteria - 150; Metazoa - 543; Fungi - 112; Plants - 97; Viruses - 6; Other Eukaryotes - 48 (source: NCBI BLink).;Alkaline-phosphatase-like family proteinCoding geneHOM002707 ORTHO214603
V AT4G29720polyamine oxidase 5 (PAO5); FUNCTIONS IN: primary amine oxidase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: LSD1-like 3 (TAIR:AT4G16310.1); Has 3107 Blast hits to 2713 proteins in 458 species: Archae - 2; Bacteria - 686; Metazoa - 1027; Fungi - 508; Plants - 550; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).;polyamine oxidase 5Coding geneHOM004690 ORTHO006705
V AT4G29730cell cycle-related repressor genes encoding WD-repeat proteins.;nucleosome/chromatin assembly factor group C5Coding geneHOM000184 ORTHO001085
V AT4G29735unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 190 Blast hits to 190 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).Coding geneHOM006914 ORTHO012063
V AT4G29740It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.;cytokinin oxidase 4Coding geneHOM000514 ORTHO025855
V AT4G29750CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3A (TAIR:AT3G23070.1); Has 408 Blast hits to 338 proteins in 45 species: Archae - 2; Bacteria - 2; Metazoa - 32; Fungi - 6; Plants - 353; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).;CRS1 / YhbY (CRM) domain-containing proteinCoding geneHOM000495 ORTHO009585
X AT4G29760unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29770.2); Has 63 Blast hits to 63 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM007209 ORTHO045673
X AT4G29770Target of trans acting-siR480/255.Coding geneHOM007209 ORTHO045672
V AT4G29780unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).Coding geneHOM000527 ORTHO003232
X AT4G29790unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits to 357 proteins in 124 species: Archae - 0; Bacteria - 74; Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink).Coding geneHOM001350 ORTHO002713
X AT4G29800PATATIN-like protein 8 (PLP8); INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-like protein 6 (TAIR:AT3G54950.1).;PATATIN-like protein 8Coding geneHOM000190 ORTHO045671
V AT4G29810encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2.;MAP kinase kinase 2Coding geneHOM000043 ORTHO009584
X AT4G29820Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit.;homolog of CFIM-25Coding geneHOM000804 ORTHO012632
V AT4G29830The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin.;Transducin/WD40 repeat-like superfamily proteinCoding geneHOM000090 ORTHO005987
V AT4G29840threonine synthase;Pyridoxal-5'-phosphate-dependent enzyme family proteinCoding geneHOM002224 ORTHO000672
X AT4G29850Eukaryotic protein of unknown function (DUF872); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0414, transmembrane (InterPro:IPR008590); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF872) (TAIR:AT2G19350.1); Has 271 Blast hits to 271 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;Eukaryotic protein of unknown function (DUF872)Coding geneHOM003418 ORTHO005721
V AT4G29860Encodes a WD repeat protein with seven WD repeat motifs, predicted to function in protein-protein interaction. Mutations caused defects in both embryo and seedling development.;Transducin/WD40 repeat-like superfamily proteinCoding geneHOM005717 ORTHO005986
V AT4G29870Oligosaccharyltransferase complex/magnesium transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharyltransferase complex/magnesium transporter (InterPro:IPR021149); BEST Arabidopsis thaliana protein match is: Oligosaccharyltransferase complex/magnesium transporter family protein (TAIR:AT2G19340.2); Has 217 Blast hits to 217 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 154; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).;Oligosaccharyltransferase complex/magnesium transporter family proteinCoding geneHOM005194 ORTHO005300
X AT4G29880Encodes PIRL7, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.;plant intracellular ras group-related LRR 7Coding geneHOM000608 ORTHO045670
V AT4G29890choline monooxygenase, putative (CMO-like); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, iron ion binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction, cellular aromatic compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Aromatic-ring-hydroxylating dioxygenase, alpha subunit (InterPro:IPR001663); Has 7402 Blast hits to 7400 proteins in 1015 species: Archae - 31; Bacteria - 4374; Metazoa - 10; Fungi - 153; Plants - 102; Viruses - 0; Other Eukaryotes - 2732 (source: NCBI BLink).;choline monooxygenase, putative (CMO-like)Coding geneHOM005439 ORTHO007412
V AT4G29900one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.;autoinhibited Ca(2+)-ATPase 10Coding geneHOM000136 ORTHO000013
X AT4G29905unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM001916 ORTHO005985
V AT4G29910Origin Recognition Complex subunit 5. Involved in the initiation of DNA replication. Interacts strongly with all ORC subunits.;origin recognition complex protein 5Coding geneHOM005192 ORTHO007411
V AT4G29920Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp amino terminal domain-containing protein (TAIR:AT5G57130.1); Has 2205 Blast hits to 2155 proteins in 769 species: Archae - 7; Bacteria - 1557; Metazoa - 28; Fungi - 31; Plants - 337; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).;Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily proteinCoding geneHOM000920 ORTHO002574
V AT4G29930basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G57150.1); Has 2210 Blast hits to 2206 proteins in 139 species: Archae - 0; Bacteria - 1; Metazoa - 70; Fungi - 0; Plants - 2126; Viruses - 9; Other Eukaryotes - 4 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily proteinCoding geneHOM000158 ORTHO045669
V AT4G29940Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding.;pathogenesis related homeodomain protein ACoding geneHOM002038 ORTHO004615
V AT4G29950Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G19240.1); Has 1856 Blast hits to 1473 proteins in 235 species: Archae - 2; Bacteria - 59; Metazoa - 791; Fungi - 326; Plants - 250; Viruses - 6; Other Eukaryotes - 422 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily proteinCoding geneHOM003298 ORTHO002336
V AT4G29960unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneHOM005665 ORTHO008119
V AT4G29970F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G04660.1); Has 742 Blast hits to 650 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 742; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box and associated interaction domains-containing proteinCoding geneHOM000233 ORTHO147016
V AT4G29980FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: Fasciclin-like arabinogalactan family protein (TAIR:AT1G30800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding geneHOM006112 ORTHO045668
V AT4G29990Leucine-rich repeat transmembrane protein kinase protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, leaf whorl, root; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: FLG22-induced receptor-like kinase 1 (TAIR:AT2G19190.1); Has 171907 Blast hits to 132045 proteins in 5043 species: Archae - 136; Bacteria - 15038; Metazoa - 48082; Fungi - 11262; Plants - 76060; Viruses - 464; Other Eukaryotes - 20865 (source: NCBI BLink).;Leucine-rich repeat transmembrane protein kinase proteinCoding geneHOM000017 ORTHO000044
V AT4G30000Dihydropterin pyrophosphokinase / Dihydropteroate synthase; FUNCTIONS IN: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, dihydropteroate synthase activity; INVOLVED IN: pteridine and derivative metabolic process, cellular metabolic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (InterPro:IPR000550), Dihydropteroate synthase (InterPro:IPR006390), Pterin-binding (InterPro:IPR000489); BEST Arabidopsis thaliana protein match is: Dihydropterin pyrophosphokinase / Dihydropteroate synthase (TAIR:AT1G69190.1).;Dihydropterin pyrophosphokinase / Dihydropteroate synthaseCoding geneHOM003585 ORTHO002670
V AT4G30010unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM005585 ORTHO003594
V AT4G30020PA-domain containing subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system, cell wall, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8A, DUF1034 C-terminal (InterPro:IPR010435), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilisin-like serine protease 3 (TAIR:AT2G19170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;PA-domain containing subtilase family proteinCoding geneHOM000020 ORTHO002462
X AT4G30030Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G30040.1); Has 1979 Blast hits to 1969 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 138; Fungi - 121; Plants - 1683; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).;Eukaryotic aspartyl protease family proteinCoding geneHOM000037 ORTHO025968
V AT4G30040Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G30030.1); Has 1813 Blast hits to 1802 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 90; Plants - 1687; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).;Eukaryotic aspartyl protease family proteinCoding geneHOM000037 ORTHO045667
V AT4G30050unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM023896 ORTHO045666
V AT4G30060Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT2G19160.1); Has 603 Blast hits to 603 proteins in 26 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 557; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).;Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family proteinCoding geneHOM000186 ORTHO001999
V AT4G30064Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 61Coding geneHOM008634 ORTHO045665
V AT4G30067Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 63Coding geneHOM008634 ORTHO045664
V AT4G30070Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.;low-molecular-weight cysteine-rich 59Coding geneHOM006829 ORTHO031830
X AT4G30072Encodes a defensin-like (DEFL) family protein.;pseudogenePseudo gene
V AT4G30074Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.;low-molecular-weight cysteine-rich 19Coding geneHOM006829 ORTHO017530
V AT4G30080Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus.;auxin response factor 16Coding geneHOM000105 ORTHO000307
V AT4G30090embryo defective 1353 (emb1353); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.1); Has 350 Blast hits to 345 proteins in 81 species: Archae - 4; Bacteria - 10; Metazoa - 172; Fungi - 10; Plants - 96; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).;embryo defective 1353Coding geneHOM001903 ORTHO045663
X AT4G30097unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
X AT4G30100P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G19120.1); Has 5876 Blast hits to 5615 proteins in 1104 species: Archae - 176; Bacteria - 1754; Metazoa - 1255; Fungi - 973; Plants - 640; Viruses - 179; Other Eukaryotes - 899 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily proteinCoding geneHOM000104 ORTHO004721
V AT4G30110encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc;heavy metal atpase 2Coding geneHOM000217 ORTHO000638
V AT4G30120encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc;heavy metal atpase 3Coding geneHOM000217 ORTHO000638
X AT4G30130Protein of unknown function (DUF630 and DUF632); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT2G19090.1); Has 587 Blast hits to 472 proteins in 32 species: Archae - 0; Bacteria - 4; Metazoa - 12; Fungi - 2; Plants - 567; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;Protein of unknown function (DUF630 and DUF632)Coding geneHOM000194 ORTHO005727
X AT4G30140Member of the GDSL lipase/esterase family of proteins that functions as cutinase. Expressed in pollen and at the zone of lateral root emergence.;GDSL-like Lipase/Acylhydrolase superfamily proteinCoding geneHOM000029 ORTHO045662
X AT4G30150CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink).Coding geneHOM006467 ORTHO009583
X AT4G30160Arabidopsis thaliana VILLIN4;villin 4Coding geneHOM000874 ORTHO000167
V AT4G30170Peroxidase family protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18980.1); Has 4599 Blast hits to 4572 proteins in 303 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 218; Plants - 4307; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).;Peroxidase family proteinCoding geneHOM000012 ORTHO010736
X AT4G30180sequence-specific DNA binding transcription factors;transcription regulators; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G18969.1); Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;sequence-specific DNA binding transcription factors;transcription regulatorsCoding geneHOM007142 ORTHO031829
V AT4G30190belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom;H(+)-ATPase 2Coding geneHOM000314 ORTHO000036
V AT4G30200Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.;vernalization5/VIN3-likeCoding geneHOM000749 ORTHO007410
V AT4G30210Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway.;P450 reductase 2Coding geneHOM000603 ORTHO000428
V AT4G30220small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1).;small nuclear ribonucleoprotein FCoding geneHOM001226 ORTHO001836
X AT4G30230unknown protein; Has 42 Blast hits to 42 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM006883 ORTHO011486
V AT4G30240Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT2G18860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Syntaxin/t-SNARE family proteinCoding geneHOM002055 ORTHO007861
V AT4G30250P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;P-loop containing nucleoside triphosphate hydrolases superfamily proteinCoding geneHOM000117 ORTHO008994
V AT4G30260Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G18840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Integral membrane Yip1 family proteinCoding geneHOM003042 ORTHO001360
V AT4G30270encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response.;xyloglucan endotransglucosylase/hydrolase 24Coding geneHOM000089 ORTHO045660
V AT4G30280Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs.;xyloglucan endotransglucosylase/hydrolase 18Coding geneHOM000089 ORTHO045659
V AT4G30290Encodes a xyloglucan endotransglucosylase/hydrolase with only only the endotransglucosylase (XET; EC 2.4.1.207) activity towards xyloglucan and non-detectable endohydrolytic (XEH; EC 3.2.1.151) activity. Expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.;xyloglucan endotransglucosylase/hydrolase 19Coding geneHOM000089 ORTHO045658
X AT4G30300member of NAP subfamily;non-intrinsic ABC protein 15Coding geneHOM001796 ORTHO245767
V AT4G30310FGGY family of carbohydrate kinase; FUNCTIONS IN: carbohydrate kinase activity, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate kinase, FGGY (InterPro:IPR000577), Carbohydrate kinase, FGGY, N-terminal (InterPro:IPR018484), Carbohydrate kinase, FGGY, C-terminal (InterPro:IPR018485), Carbohydrate kinase, FGGY-related (InterPro:IPR006003); Has 16218 Blast hits to 14320 proteins in 2322 species: Archae - 199; Bacteria - 12888; Metazoa - 473; Fungi - 341; Plants - 104; Viruses - 0; Other Eukaryotes - 2213 (source: NCBI BLink).;FGGY family of carbohydrate kinaseCoding geneHOM004770 ORTHO008118
V AT4G30320CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G57625.1); Has 2975 Blast hits to 2877 proteins in 376 species: Archae - 0; Bacteria - 64; Metazoa - 1595; Fungi - 339; Plants - 887; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).;CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily proteinCoding geneHOM000169 ORTHO005299
V AT4G30330Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G18740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Small nuclear ribonucleoprotein family proteinCoding geneHOM002963 ORTHO001841
V AT4G30340encodes a diacylglycerol kinase. Applying a specific diacylglycerol kinase inhibitor to the growth media resulted in reduced root elongation and plant growth. Gene is expressed throughout the plant but is strongest in flowers and young seedlings.;diacylglycerol kinase 7Coding geneHOM000973 ORTHO003434