Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_cre_2
Cluster type
GO
Species
Chlamydomonas reinhardtii
Chromosome
chloroplast
E-value
0.0000000185535
GO label
GO:0032991
GO description
macromolecular complex
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM0002113604225
HOM0002153568125
HOM0004822022123
HOM0007701412125
HOM0009611172223
HOM0010291093123
HOM001724701120
HOM001874662125
HOM002332552125
HOM002716472119
HOM003713361121
HOM004631311122
HOM004802301122
HOM005581261119
HOM006468211118
HOM006756191119

Gene information

In cluster Gene id Description Gene type Gene family
V CRCG00120rpl20;ribosomal protein L20;protein_id=DAA00909.1;Coding geneHOM001874 ORTHO024012
X CRCG00130trnS1;tRNA-Ser;RNA gene
X CRCG00140trnW;tRNA-Trp;RNA gene
X CRCG00150clpP;Clp protease proteolytic subunit;protein_id=DAA00910.1;Coding geneHOM000202 ORTHO093763
X CRCG00160trnL1;tRNA-Leu;RNA gene
X CRCG00170petB;cytochrome b6;protein_id=DAA00911.1;Coding geneHOM000462 ORTHO004309
X CRCG00180chlL;light-independent protochlorophyllide reductase subunit L;protein_id=DAA00912.1;Coding geneHOM014448 ORTHO027641
V CRCG00190rpl36;ribosomal protein L36;protein_id=DAA00913.1;Coding geneHOM003713 ORTHO002795
V CRCG00200rpl23;ribosomal protein L23;protein_id=DAA00914.1;Coding geneHOM001724 ORTHO000441
V CRCG00210rpl2;ribosomal protein L2;protein_id=DAA00915.1;Coding geneHOM000770 ORTHO000561
X CRCG00220rps19;ribosomal protein S19;protein_id=DAA00916.1;Coding geneHOM000739 ORTHO000923
X CRCG00230rpl16;ribosomal protein L16;protein_id=DAA00917.1;Coding geneHOM000614 ORTHO001799
X CRCG00240rpl14;ribosomal protein L14;protein_id=DAA00918.1;Coding geneHOM000614 ORTHO002148
V CRCG00250rpl5;ribosomal protein L5;protein_id=DAA00919.1;Coding geneHOM004802 ORTHO005950
X CRCG00260rps8;ribosomal protein S8;protein_id=DAA00920.1;Coding geneHOM000614 ORTHO003780
X CRCG00270trnM1;tRNA-Met;RNA gene
X CRCG00280trnG1;tRNA-Gly;RNA gene
X CRCG00290rps4;ribosomal protein S4;protein_id=DAA00921.1;Coding geneHOM002742 ORTHO001806
X CRCG00300rrnS;16S ribosomal RNA;RNA gene
X CRCG00310trnI;tRNA-Ile;RNA gene
X CRCG00320trnA;tRNA-Ala;RNA gene
X CRCG00330rrn7;7S ribosomal RNA;RNA gene
X CRCG00340rrn3;3S ribosomal RNA;RNA gene
X CRCG00350rrnL;23S ribosomal RNA;RNA gene
X CRCG00360rrn5;5S ribosomal RNA;RNA gene
V CRCG00370psbA;photosystem II reaction center protein D1;protein_id=DAA00922.1;Coding geneHOM000961 ORTHO001130
X CRCG00380trnS2;tRNA-Ser;RNA gene
X CRCG00390ycf12;hypothetical protein;protein_id=DAA00923.1;Coding genesingleton
V CRCG00400atpE;CF1 ATP synthase epsilon subunit;protein_id=DAA00924.1;Coding geneHOM000211 ORTHO007549
V CRCG00410rps7;ribosomal protein S7;protein_id=DAA00925.1;Coding geneHOM000482 ORTHO000656
X CRCG00420rps14;ribosomal protein S14;protein_id=DAA00926.1;Coding geneHOM000575 ORTHO005606
V CRCG00430psbM;photosystem II reaction center protein M;protein_id=DAA00927.1;Coding genesingleton
X CRCG00440psbZ;photosystem II reaction center protein Z;protein_id=DAA00928.1;Coding geneHOM000619 ORTHO004311
X CRCG00450ccsA;heme attachment protein;protein_id=DAA00929.1;Coding geneHOM000431 ORTHO006162
X CRCG00460trnL2;tRNA-Leu;RNA gene
X CRCG00470trnE2;tRNA-Glu;RNA gene
X CRCG00480psbH;photosystem II reaction center protein H;protein_id=DAA00930.1;Coding geneHOM000462 ORTHO002966
V CRCG00490psbN;photosystem II reaction center protein N;protein_id=DAA00931.1;Coding geneHOM006468 ORTHO027642
V CRCG00500psbT;photosystem II reaction center protein T;protein_id=DAA00932.1;Coding genesingleton
X CRCG00510psbB;photosystem II P680 chlorophyll A apoprotein;protein_id=DAA00933.1;Coding geneHOM000462 ORTHO002967
X CRCG00520trnD;tRNA-Asp;RNA gene
X CRCG00530rpoA;RNA polymerase alpha subunit;protein_id=DAA00934.1;Coding geneHOM001081 ORTHO001805
X CRCG00540rps2;ribosomal protein S2;protein_id=DAA00935.1;Coding geneHOM000215 ORTHO033956
X CRCG00550rps2;ribosomal protein S2;protein_id=DAA00936.1;Coding geneHOM000215 ORTHO002665
V CRCG00560rps18;ribosomal protein S18;protein_id=DAA00937.1;Coding geneHOM004631 ORTHO004310
X CRCG00570ycf3;photosystem I assembly protein ycf3;protein_id=DAA00938.1;Coding geneHOM002384 ORTHO006334
X CRCG00580ycf4;photosystem I assembly protein ycf4;protein_id=DAA00939.1;Coding geneHOM003137 ORTHO002663
V CRCG00590rps9;ribosomal protein S9;protein_id=DAA00940.1;Coding geneHOM002332 ORTHO005632
X CRCG00600psbE;cytochrome b559;protein_id=DAA00941.1;Coding geneHOM001436 ORTHO001236
X CRCG00610trnM2;tRNA-Met;RNA gene
X CRCG00620rpoB-2;RNA polymerase beta subunit II;protein_id=DAA00942.1;Coding geneHOM000550 ORTHO001338
X CRCG00630rpoB-1;RNA polymerase beta subunit I;protein_id=DAA00943.1;Coding geneHOM000550 ORTHO001338
V CRCG00640psbF;cytochrome b559 beta subunit;protein_id=DAA00944.1;Coding geneHOM006756 ORTHO010425
X CRCG00650psbL;photosystem II reaction center protein L;protein_id=DAA00945.1;Coding geneHOM001436 ORTHO006120
X CRCG00660petG;cytochrome b6/f complex subunit 5;protein_id=DAA00946.1;Coding geneHOM006438 ORTHO010426
X CRCG00670rps3;ribosomal protein S3;protein_id=DAA00947.1;Coding geneHOM000739 ORTHO001954
X CRCG00680rpoC2;RNA polymerase beta' subunit;protein_id=DAA00948.1;Coding geneHOM001193 ORTHO001668
X CRCG00690trnY;tRNA-Tyr;RNA gene
X CRCG00700trnQ;tRNA-Gln;RNA gene
X CRCG00710psaB;photosystem I P700 chlorophyll A apoprotein A2;protein_id=DAA00949.2;Coding geneHOM000575 ORTHO001434
X CRCG00720trnG2;tRNA-Gly;RNA gene
X CRCG00730rbcL;ribulose bisphosphate carboxylase small subunit;protein_id=DAA00950.1;Coding geneHOM000775 ORTHO001077
X CRCG00740atpA;CF1 ATP synthase alpha subunit;protein_id=DAA00951.1;Coding geneHOM000215 ORTHO004312
V CRCG00750psbI;photosystem II reaction center protein I;protein_id=DAA00952.1;Coding geneHOM002716 ORTHO012703
X CRCG00760cemA;envelope membrane protein;protein_id=DAA00953.1;Coding geneHOM001150 ORTHO009935
X CRCG00770atpH;CF0 ATP synthase subunit III;protein_id=DAA00954.1;Coding geneHOM000215 ORTHO001974
V CRCG00780atpF;CF0 ATP synthase subunit I;protein_id=DAA00955.1;Coding geneHOM005581 ORTHO007020
X CRCG00790rps11;ribosomal protein S11;protein_id=DAA01543.1;Coding geneHOM001081 ORTHO002662
X CRCG00800trnK;tRNA-Lys;RNA gene
X CRCG00810tscA;RNA gene
X CRCG00820chlN;light-independent protochlorophyllide reductase subunit N;protein_id=DAA00956.1;Coding geneHOM018271 ORTHO033957
V CRCG00830psbA;photosystem II reaction center protein D1;protein_id=DAA00957.1;Coding geneHOM000961 ORTHO001130
X CRCG00840rrn5;5S ribosomal RNA;RNA gene
X CRCG00850rrnL;23S ribosomal RNA;RNA gene
X CRCG00860rrn3;3S ribosomal RNA;RNA gene
X CRCG00870rrn7;7S ribosomal RNA;RNA gene
X CRCG00880trnA;tRNA-Ala;RNA gene
X CRCG00890trnI;tRNA-Ile;RNA gene
X CRCG00900rrnS;16S ribosomal RNA;RNA gene
V CRCG00910atpB;CF1 ATP synthase beta subunit;protein_id=DAA00958.1;Coding geneHOM000211 ORTHO001337
X CRCG00920ORF1995;hypothetical protein;protein_id=DAA00959.1;Coding genesingleton
V CRCG00930rps12;ribosomal protein S12;protein_id=DAA00960.1;Coding geneHOM001029 ORTHO011655
V CRCG00940psaJ;photosystem I reaction center subunit IX;protein_id=DAA00961.1;Coding geneHOM000215 ORTHO051382
X CRCG00950atpI;CF0 ATP synthase subunit IV;protein_id=DAA00962.1;Coding geneHOM000215 ORTHO005607
V CRCG00960psbJ;photosystem II reaction center protein J;protein_id=DAA00963.1;Coding genesingleton