Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_ath_4
Cluster type
GO
Species
Arabidopsis thaliana
Chromosome
4
E-value
1.12588e-30
GO label
GO:0012501
GO description
programmed cell death
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM00000634141161820

Gene information

In cluster Gene id Description Gene type Gene family
V AT4G23130Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307);cysteine-rich RLK (RECEPTOR-like protein kinase) 5Coding geneHOM000006 ORTHO000250
V AT4G23140Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307);cysteine-rich RLK (RECEPTOR-like protein kinase) 6Coding geneHOM000006 ORTHO000250
V AT4G23150Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 7Coding geneHOM000006 ORTHO000250
V AT4G23160Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 8Coding geneHOM000006 ORTHO000250
V AT4G23170Induced in response to Salicylic acid.Similar to receptor-like kinase 4 and 5. NPR1, a known positive regulator of the SA signaling pathway is responsible for the SA-dependent induction and constitutive repression of EP1 gene's basal expression.;receptor-like protein kinase-related family proteinCoding geneHOM000006 ORTHO215973
V AT4G23180Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307);cysteine-rich RLK (RECEPTOR-like protein kinase) 10Coding geneHOM000006 ORTHO000250
V AT4G23190Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307);cysteine-rich RLK (RECEPTOR-like protein kinase) 11Coding geneHOM000006 ORTHO005595
X AT4G23205Unknown gene;rna_type=other_rna;other RNARNA gene
V AT4G23200Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 12Coding geneHOM000006 ORTHO005595
V AT4G23210Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid.;cysteine-rich RLK (RECEPTOR-like protein kinase) 13Coding geneHOM000006 ORTHO005595
X AT4G23215pseudogene of cysteine-rich receptor-like protein kinase family protein;pseudogenePseudo gene
V AT4G23220Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 14Coding geneHOM000006 ORTHO005595
V AT4G23230Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 15Coding geneHOM000006 ORTHO000250
X AT4G23240Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 16Coding geneHOM000006 ORTHO078308
V AT4G23250EMBRYO DEFECTIVE 1290 (EMB1290); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (TAIR:AT4G23260.1); Has 121653 Blast hits to 119053 proteins in 4422 species: Archae - 98; Bacteria - 13672; Metazoa - 43987; Fungi - 10320; Plants - 35330; Viruses - 426; Other Eukaryotes - 17820 (source: NCBI BLink).;kinases;protein kinasesCoding geneHOM000006 ORTHO005595
V AT4G23260Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 18Coding geneHOM000006 ORTHO005595
V AT4G23270Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 19Coding geneHOM000006 ORTHO000250
X AT4G23271unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
V AT4G23280Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 20Coding geneHOM000006 ORTHO000250
V AT4G23290Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 21Coding geneHOM000006 ORTHO005595
V AT4G23300Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 22Coding geneHOM000006 ORTHO005595
V AT4G23310Encodes a cysteine-rich receptor-like protein kinase.;cysteine-rich RLK (RECEPTOR-like protein kinase) 23Coding geneHOM000006 ORTHO000250