Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_ath_166
Cluster type
GO
Species
Arabidopsis thaliana
Chromosome
3
E-value
0.00000594933
GO label
GO:0008305
GO description
integrin complex
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM0014248210319

Gene information

In cluster Gene id Description Gene type Gene family
V AT3G28270Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G28290.1); Has 636 Blast hits to 621 proteins in 191 species: Archae - 37; Bacteria - 189; Metazoa - 134; Fungi - 25; Plants - 165; Viruses - 1; Other Eukaryotes - 85 (source: NCBI BLink).;Protein of unknown function (DUF677)Coding geneHOM001424 ORTHO025905
X AT3G28280BEST Arabidopsis thaliana protein match is: F-box family protein-related (TAIR:AT3G28330.1); Has 103 Blast hits to 100 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM002740 ORTHO031664
V AT3G28290Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.;Protein of unknown function (DUF677)Coding geneHOM001424 ORTHO046758
X AT3G28291unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).Coding genesingleton
X AT3G28295gypsy-like retrotransposon family, has a 6.4e-29 P-value blast match to aF23C08 reverse transcriptase (from Dan Voytas http://www.public.iastate.edu/~voytas) (Gypsy_Ty3-family);rna_type=other_rna;transposable element geneTransposon
V AT3G28300Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.;Protein of unknown function (DUF677)Coding geneHOM001424 ORTHO046758