Functional Clustering  


Cluster information

Cluster overview

Cluster id
CH_ath_131
Cluster type
GO
Species
Arabidopsis thaliana
Chromosome
4
E-value
0.00000039317
GO label
GO:0003824
GO description
catalytic activity
 

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM0000053735157424
HOM000016195160320
HOM000023173955321
HOM000033148947425
HOM00007287730424
HOM00008281428225
HOM00020436513125
HOM00021335615225
HOM0002323359214
HOM0003632489125
HOM00040723012120
HOM0006991536121
HOM0010461072120
HOM006084231119

Gene information

In cluster Gene id Description Gene type Gene family
V AT4G15210cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.;beta-amylase 5Coding geneHOM000363 ORTHO003454
V AT4G15215pleiotropic drug resistance 13 (PDR13); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 2 (TAIR:AT4G15230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;pleiotropic drug resistance 13Coding geneHOM000033 ORTHO000005
V AT4G15230pleiotropic drug resistance 2 (PDR2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 13 (TAIR:AT4G15215.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;pleiotropic drug resistance 2Coding geneHOM000033 ORTHO000005
V AT4G15233ABC-2 and Plant PDR ABC-type transporter family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT4G15236.1).;ABC-2 and Plant PDR ABC-type transporter family proteinCoding geneHOM000033 ORTHO000005
V AT4G15236ABC-2 and Plant PDR ABC-type transporter family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT4G15233.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;ABC-2 and Plant PDR ABC-type transporter family proteinCoding geneHOM000033 ORTHO000005
V AT4G15240Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT1G05280.1); Has 575 Blast hits to 564 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 162; Plants - 266; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;Protein of unknown function (DUF604)Coding geneHOM000407 ORTHO013158
X AT4G15242rna_type=other_rna;other RNARNA gene
X AT4G15248B-box type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT3G21890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;B-box type zinc finger family proteinCoding geneHOM000744 ORTHO011907
X AT4G15250B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT3G21880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;B-box type zinc finger protein with CCT domainCoding geneHOM000744 ORTHO045991
X AT4G15258Encodes a C/D box snoRNA (snoR37-2). Gb: AJ505638;rna_type=snorna;SNOR37-2; snoRNARNA gene
V AT4G15260UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71B5 (TAIR:AT4G15280.1); Has 7322 Blast hits to 7283 proteins in 449 species: Archae - 0; Bacteria - 472; Metazoa - 1888; Fungi - 30; Plants - 4859; Viruses - 20; Other Eukaryotes - 53 (source: NCBI BLink).;UDP-Glycosyltransferase superfamily proteinCoding geneHOM000016 ORTHO021057
V AT4G15270glucosyltransferase-related; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71B5 (TAIR:AT4G15280.1); Has 1593 Blast hits to 1031 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1593; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;glucosyltransferase-relatedCoding geneHOM000016 ORTHO021288
V AT4G15280UDP-glucosyl transferase 71B5 (UGT71B5); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT4G15260.1); Has 7674 Blast hits to 7626 proteins in 477 species: Archae - 0; Bacteria - 573; Metazoa - 2069; Fungi - 31; Plants - 4920; Viruses - 24; Other Eukaryotes - 57 (source: NCBI BLink).;UDP-glucosyl transferase 71B5Coding geneHOM000016 ORTHO021057
V AT4G15290encodes a gene similar to cellulose synthase;Cellulose synthase family proteinCoding geneHOM000082 ORTHO000594
V AT4G15300a member of the cytochrome P450 gene family. molecular function unknown.;cytochrome P450, family 702, subfamily A, polypeptide 2Coding geneHOM000072 ORTHO016564
V AT4G15310a member of the cytochrome P450 gene family. molecular function unknown.;cytochrome P450, family 702, subfamily A, polypeptide 3Coding geneHOM000072 ORTHO046002
V AT4G15320encodes a gene similar to cellulose synthase;cellulose synthase-like B6Coding geneHOM000082 ORTHO000594
V AT4G15330a member of the cytochrome P450 family;cytochrome P450, family 705, subfamily A, polypeptide 1Coding geneHOM000005 ORTHO086338
V AT4G15340Encodes a protein that catalyzes the production of the tricyclic triterpene arabidiol when expressed in yeast.;pentacyclic triterpene synthase 1Coding geneHOM000213 ORTHO000026
X AT4G15345cytochrome P450 pseudogene;CYP702A4P ("cytochrome P450, family 702, subfamily A, polypeptide 4 pseudogene")Pseudo gene
V AT4G15350member of CYP705A;cytochrome P450, family 705, subfamily A, polypeptide 2Coding geneHOM000005 ORTHO006440
V AT4G15360member of CYP705A;cytochrome P450, family 705, subfamily A, polypeptide 3Coding geneHOM000005 ORTHO045990
V AT4G15370Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.;baruol synthase 1Coding geneHOM000213 ORTHO000026
V AT4G15380member of CYP705A;cytochrome P450, family 705, subfamily A, polypeptide 4Coding geneHOM000005 ORTHO031500
V AT4G15390HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G30280.1); Has 2282 Blast hits to 2273 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 35; Plants - 2239; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;HXXXD-type acyl-transferase family proteinCoding geneHOM000232 ORTHO021202
V AT4G15393a member of the cytochrome P450 gene family. molecular function unknown.;cytochrome P450, family 702, subfamily A, polypeptide 5Coding geneHOM000072 ORTHO016564
V AT4G15396a member of the cytochrome P450 family. molecular function unknown.;cytochrome P450, family 702, subfamily A, polypeptide 6Coding geneHOM000072 ORTHO016564
X AT4G15398cytochrome P450 pseudogene;CYP702A7P ("cytochrome P450, family 702, subfamily A, polypeptide 7 pseudogene")Pseudo gene
V AT4G15400HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G47980.1); Has 2123 Blast hits to 2120 proteins in 128 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 33; Plants - 2088; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;HXXXD-type acyl-transferase family proteinCoding geneHOM000232 ORTHO045989
X AT4G15410serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma (PUX5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012), SEP domain (InterPro:IPR012989), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: plant UBX domain containing protein 4 (TAIR:AT4G04210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gammaCoding geneHOM001897 ORTHO001115
X AT4G15415B' regulatory subunit of PP2A (AtB'gamma);Protein phosphatase 2A regulatory B subunit family proteinCoding geneHOM000243 ORTHO000185
V AT4G15417RNAse II-like 1 (RTL1); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 2 (TAIR:AT3G20420.1); Has 6428 Blast hits to 6386 proteins in 2315 species: Archae - 23; Bacteria - 4325; Metazoa - 271; Fungi - 247; Plants - 236; Viruses - 14; Other Eukaryotes - 1312 (source: NCBI BLink).;RNAse II-like 1Coding geneHOM000204 ORTHO009617
V AT4G15420Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: proteolysis, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Peptidase, C-terminal, archaeal/bacterial (InterPro:IPR007280), Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G29070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ubiquitin fusion degradation UFD1 family proteinCoding geneHOM006084 ORTHO009715
X AT4G15430ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 1447 Blast hits to 1280 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 705; Plants - 434; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).;ERD (early-responsive to dehydration stress) family proteinCoding geneHOM000325 ORTHO000127
V AT4G15440Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase.;hydroperoxide lyase 1Coding geneHOM001046 ORTHO011510
X AT4G15450Senescence/dehydration-associated protein-related; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT3G21600.1); Has 171 Blast hits to 171 proteins in 35 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;Senescence/dehydration-associated protein-relatedCoding geneHOM001169 ORTHO007444
X AT4G15460glycine-rich protein; Has 67845 Blast hits to 15829 proteins in 1211 species: Archae - 58; Bacteria - 32023; Metazoa - 17349; Fungi - 2646; Plants - 6740; Viruses - 863; Other Eukaryotes - 8166 (source: NCBI BLink).;glycine-rich proteinCoding geneHOM028142 ORTHO115394
X AT4G15470Bax inhibitor-1 family protein; CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT1G03070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Bax inhibitor-1 family proteinCoding geneHOM000951 ORTHO003618
V AT4G15475F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;F-box/RNI-like superfamily proteinCoding geneHOM000699 ORTHO001689
V AT4G15480Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.;UDP-Glycosyltransferase superfamily proteinCoding geneHOM000023 ORTHO004640
V AT4G15490Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.;UDP-Glycosyltransferase superfamily proteinCoding geneHOM000023 ORTHO016548
V AT4G15500Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.;UDP-Glycosyltransferase superfamily proteinCoding geneHOM000023 ORTHO016548